Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 182682087

GI number: 182682087

Start: 1737171

End: 1739111

Strand: Direct

Name: ccmF [H]

Synonym: XfasM23_1565

Alternate gene names: 182682087

Gene position: 1737171-1739111 (Clockwise)

Preceding gene: 182682086

Following gene: 182682088

Centisome position: 68.51

GC content: 60.23

Gene sequence:

>1941_bases
ATGCTGCCTGAGTTTGGCCAGATCCTCCTGATCCTCGCCCTGCTGACAGCACTGCTGCAGGGACTGCTTCCCCTGATTGG
CGCCCAGCGCCGCCGCACTGCTTGGATGGCCGTTGCACGCCCAGCCGCCTATGTGCAACTGAGCCTGCTCGCTAGCGCAT
TCGCACTGCTCACCTATGCCTTCCTCGGCAACGACTTCTCCGTCCAGTACGTCGCCGAAAACTCTCATTCACTGCTACCC
ACCCTCTACCGCTCTACCGCCGTGTGGGGTGCCCACGAAGGATCCCTCCTACTCTGGGTATTACTCCTGGCAGGATGGAC
CGCCAGCGTCGCCTTACGTTCCCACACCCTCCCAGCCACCCTGAGCGCACGCATCCTTGGCGTCCTGGGCCTGATTGCAC
TCGGCTTCCTCGCACTGATCCTCTTCACCTCCAACCCATTCGCACGTCTCCTGCCTGCCGTCCCAGAAGGGAACGACCTC
AACCCGTTGCTGCAAGATCCCGGAATGATTCTGCATCCCCCCCTGTTATATGCCGGCTACATCGGTTTGGCGGTACCATT
CGCCTTTGCCGTCGCGGTCCTGCTGGAAGGACGGATAGAGCCAGCCTGGCTACGCTGGAGCCGACCTTGGACCAACATCG
CCTGGGCACTGCTGACCTTGGGCATTGCCCTGGGCAGCTGGTGGGCCTATTACGAACTCGGCTGGGGCGGCTGGTGGTTC
TGGGACCCAGTGGAAAACGCCAGCTTCATGCCTTGGCTCATCGGTGTCGCACTGATTCATTCCCAAGCGATCACCGACAA
ACGCGGCAGCTTCACCCAATGGACACTCCTGCTCGCAATCACCGCCTTTGCACTAGCACTGCTTGGCACATTCCTCGTTC
GCTCAAGCGTACTGACCTCAGTCCATGCCTTTGCTGCTGATCCGGTACGCGGCACGTTTATTCTGCTGCTCATCTTCACG
TTGATTGGCGGCGCACTGCTGCTGTATGCACGGCGTGCACCGCAGCTCACCCCCGTCACAATGGACATGCAACAACGCTT
TACACCCGTCTCACGCGAAACCCTATTACTGCTCAACAACCTATTGCTGACCTGCGCCTGTGCGATGGTACTGCTAGGCA
CCCTCTATCCCCTGCTGGCCGATGCACTGGCACTGGGTCAACTTTCAGTCGGCCCACCCTACTTCGGCCCCCTATTCACC
CTGCTGATGACACCACTAATCGTCTTACTGCCATTGGGTCCATTCACCCGATGGCAACGCGAACACCCCTCAACACCCCT
CGTATTGCTGGCCCCTTGGGCCGCACTGAGCCTGGTTGTCGCCGCACTGGCTGGCATCGCCACACCACAACACCATTGGA
AAACCATGCTCAGCGTGGCCGCGGCAGCATGGGTACTCCTAGGAACCCTCCGCTTCCTCTGGTGGCACTGGCGCACCACC
GAATCCCGTCCCACCCCCAGCACCCTGGGCATGGTCCTGGCACACGCCGGAATTGGCGTCTTCCTCACTGGTGCGCTGTT
AGTTGAAACACTCAGCCTACAACGTGAAATTGCACTCACCCCTGGCCAGACACTCACCCTCGGCCCCATCACCCTACACT
TTGATGCCATCCTCGAACACCACGGCCCCAACTACGTGGCTGATCGCGCCCAATTCAGCCTATTACGCAACACGCATCCC
CTGGGCACCCTGACGACAGAAAAACGCCGCTATGTCAGTGGCGGCCAAGTCACCACCGAAGTTGGCATCCATCCTGGAGC
GCTCGGTGATATTTACGTCGCCTTAGGAGAATCGCTCGGCAATGGGTCATGGGCAATTCAGGCACACTACAAACCATTCG
TCCGCTGGATCTGGCTGGGCGCAGCACTGATGGCCCTGGGCGGGCTGATCGCTGCTGCTGATCGCCGGTTCCGCCACCAC
CCGGAGTCATCGCATGTCTGA

Upstream 100 bases:

>100_bases
CCGGTATCAGATGATGCCTCCCCAGCCCCTGGAACCACACCCTGCACCCCTGCTCCTCCCATGAAGCCCCCCCGCCGCAT
CCCCACTCGATACAACCCAC

Downstream 100 bases:

>100_bases
TTCACCCCGCCGCTTTCCCACCCCGCTACTCCTTACAGGTGTCATGGGAGTGCTGATCCTGATCGCACTGCTCACCTTCA
CATTAATGCGCTCCTGGGAT

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 646; Mature: 646

Protein sequence:

>646_residues
MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLASAFALLTYAFLGNDFSVQYVAENSHSLLP
TLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPATLSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDL
NPLLQDPGMILHPPLLYAGYIGLAVPFAFAVAVLLEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGVALIHSQAITDKRGSFTQWTLLLAITAFALALLGTFLVRSSVLTSVHAFAADPVRGTFILLLIFT
LIGGALLLYARRAPQLTPVTMDMQQRFTPVSRETLLLLNNLLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFT
LLMTPLIVLLPLGPFTRWQREHPSTPLVLLAPWAALSLVVAALAGIATPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRTT
ESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLGPITLHFDAILEHHGPNYVADRAQFSLLRNTHP
LGTLTTEKRRYVSGGQVTTEVGIHPGALGDIYVALGESLGNGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHH
PESSHV

Sequences:

>Translated_646_residues
MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLASAFALLTYAFLGNDFSVQYVAENSHSLLP
TLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPATLSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDL
NPLLQDPGMILHPPLLYAGYIGLAVPFAFAVAVLLEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGVALIHSQAITDKRGSFTQWTLLLAITAFALALLGTFLVRSSVLTSVHAFAADPVRGTFILLLIFT
LIGGALLLYARRAPQLTPVTMDMQQRFTPVSRETLLLLNNLLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFT
LLMTPLIVLLPLGPFTRWQREHPSTPLVLLAPWAALSLVVAALAGIATPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRTT
ESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLGPITLHFDAILEHHGPNYVADRAQFSLLRNTHP
LGTLTTEKRRYVSGGQVTTEVGIHPGALGDIYVALGESLGNGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHH
PESSHV
>Mature_646_residues
MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLASAFALLTYAFLGNDFSVQYVAENSHSLLP
TLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPATLSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDL
NPLLQDPGMILHPPLLYAGYIGLAVPFAFAVAVLLEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLIGVALIHSQAITDKRGSFTQWTLLLAITAFALALLGTFLVRSSVLTSVHAFAADPVRGTFILLLIFT
LIGGALLLYARRAPQLTPVTMDMQQRFTPVSRETLLLLNNLLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFT
LLMTPLIVLLPLGPFTRWQREHPSTPLVLLAPWAALSLVVAALAGIATPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRTT
ESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLGPITLHFDAILEHHGPNYVADRAQFSLLRNTHP
LGTLTTEKRRYVSGGQVTTEVGIHPGALGDIYVALGESLGNGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHH
PESSHV

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=655, Percent_Identity=48.5496183206107, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1790511, Length=358, Percent_Identity=49.7206703910614, Blast_Score=273, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70475; Mature: 70475

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLASAFALLTYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FLGNDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPAT
HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHH
LSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDLNPLLQDPGMILHPPLLYAGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
IGLAVPFAFAVAVLLEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLIGVALIHSQAITDKRGSFTQWTLLLAITAFALALLGTFLVRSSVLTS
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPVRGTFILLLIFTLIGGALLLYARRAPQLTPVTMDMQQRFTPVSRETLLLLNN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCHHHHHHHHH
LLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFTLLMTPLIVLLPLGPFTRWQR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
EHPSTPLVLLAPWAALSLVVAALAGIATPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRTT
CCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
ESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLGPITLHFDAILEH
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHH
HGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGALGDIYVALGESLG
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCC
NGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHHPESSHV
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLASAFALLTYA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
FLGNDFSVQYVAENSHSLLPTLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPAT
HHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCHH
LSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDLNPLLQDPGMILHPPLLYAGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHCCCCEECCHHHHHHH
IGLAVPFAFAVAVLLEGRIEPAWLRWSRPWTNIAWALLTLGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCCCHHEECCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLIGVALIHSQAITDKRGSFTQWTLLLAITAFALALLGTFLVRSSVLTS
ECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHAFAADPVRGTFILLLIFTLIGGALLLYARRAPQLTPVTMDMQQRFTPVSRETLLLLNN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHCCCCCHHHHHHHHH
LLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFTLLMTPLIVLLPLGPFTRWQR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
EHPSTPLVLLAPWAALSLVVAALAGIATPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRTT
CCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
ESRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALTPGQTLTLGPITLHFDAILEH
CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCHHHHHHHHHHH
HGPNYVADRAQFSLLRNTHPLGTLTTEKRRYVSGGQVTTEVGIHPGALGDIYVALGESLG
CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCC
NGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHHPESSHV
CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA