Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182682004
Identifier: 182682004
GI number: 182682004
Start: 1630715
End: 1631989
Strand: Reverse
Name: 182682004
Synonym: XfasM23_1479
Alternate gene names: NA
Gene position: 1631989-1630715 (Counterclockwise)
Preceding gene: 182682005
Following gene: 182682003
Centisome position: 64.36
GC content: 41.33
Gene sequence:
>1275_bases ATGCTGATGTGTATGAAAAAGATCACCAAAGAGAATTCACGGAATCTTCTTGTTGGAATAGTTCTGTTTTTGGGAGTGGC TTATAACTTTCCGTTAGCCATGATTAACGCCAAAGTTTTTACGGTGACTCCAGTGATGACTTATGCAGTGGAGTTGGTAA TTTATTTTGCCTGTTTCATGCTCGGATTATCTGCATTGCATCGCAAGCGCGTTGTGCTTGTGATGAGTGGTCTCGGGTTT CTCGTTGCATTGACGTTACTACGGTTTTTGATGAGTTTGGATTTTGATCCAAAATTCTTCAGGGATGCGCTGATTCCGTT CGCTTTTCTGATACTCGGTGCAGCCTACCGTGGATCTTTGCTGCGTCTATTCATGGGCATGAGTATTTTTATTACTTTTG TTGCTGTTTTCGAGTTAATGATGCCAGATGTTTATGGCGACATTGCCAATCCGAAAAGTTATTTCGTGAATTCTCGTGGT GCTAGCGCAGACGGTTTCTGGAATGAAGGGAGTAGTTTGTATCTTAGTGCGACGCGTCCGGATGAGCGTAACTTCTTTGC TGGTTCGAATTTACCGCGTGCATCTTCTGTGTTCATTGAACCGGTGACGATGGGAAATTACATTATATTTTTTGCTGCAA TTGTGTTGGTTTTCTGGCGTTGGATGAGTGTCTCCGAGTTGATTTTATCGATCGCAATGATCGTATTTTTAATTGTCGCT TCAGATGGCCGTTTGGCGACTGGTACATGCATATTAATGGTATTGCTTGCACCATTTCTTAAACGTTTTGATCAGCGTTT TGCGTTTTTGTTATTTTTTTCGGTGTTACTCGGTGGATGGTTCATAGTTCAGCTGAATGGTATTCATACATATGACAAGG ATACGATTCTGAGCAGGACTTTTTTCAGTGTGTATTCATTGGCTCACTTGCCCTTGGATTCGTGGTTTGGCTTGGATGTT CAGTCGTCCTATCGTTATTTTGATAGTGGTATTGCTTATTTCATCGCGTCACAGTCAGTTATCACTGTACTTGTTTTTTT GTTGTCTTATTCATTTCTTTTCGACATGCAAAGTCATGAGGGGAGGGGATTTAAAAACATGGCCATATTCGCATTTGCAT TGAGTCTTTTGGTATCAAATAGTTATTTTTCGATTAAAACGTCTGCGTTGTGGTGGTTTACGTGTGGCTGTCTTTGGAAT TGCTCGCCTAATGTATTGGCTGCAAAAAGGAATCTTGTAGAAGCGAGAGTGATAGCACAAGTAGGTGTGTCGTGA
Upstream 100 bases:
>100_bases TAGAATTATTGTTTTGACTTTAGTACGTGTACTTGGTCAGAAAAATGCTTATTGATCTTAGATGTTTCAGTCCATGCATG GTTGTGTCAGGAGAGTTTCC
Downstream 100 bases:
>100_bases TCAATAAAAAAAAGTATGTGCCAGTAGGAGTGGGGACATTAGCGCACTCTCCGGGATCTCTATCAGTTGGGCGTGATGCG CGTATTGATGCGGCGAAGGG
Product: GumE protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Protein; Xanthan Biosynthesis Exopolysaccharide Polymerase GumE
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MLMCMKKITKENSRNLLVGIVLFLGVAYNFPLAMINAKVFTVTPVMTYAVELVIYFACFMLGLSALHRKRVVLVMSGLGF LVALTLLRFLMSLDFDPKFFRDALIPFAFLILGAAYRGSLLRLFMGMSIFITFVAVFELMMPDVYGDIANPKSYFVNSRG ASADGFWNEGSSLYLSATRPDERNFFAGSNLPRASSVFIEPVTMGNYIIFFAAIVLVFWRWMSVSELILSIAMIVFLIVA SDGRLATGTCILMVLLAPFLKRFDQRFAFLLFFSVLLGGWFIVQLNGIHTYDKDTILSRTFFSVYSLAHLPLDSWFGLDV QSSYRYFDSGIAYFIASQSVITVLVFLLSYSFLFDMQSHEGRGFKNMAIFAFALSLLVSNSYFSIKTSALWWFTCGCLWN CSPNVLAAKRNLVEARVIAQVGVS
Sequences:
>Translated_424_residues MLMCMKKITKENSRNLLVGIVLFLGVAYNFPLAMINAKVFTVTPVMTYAVELVIYFACFMLGLSALHRKRVVLVMSGLGF LVALTLLRFLMSLDFDPKFFRDALIPFAFLILGAAYRGSLLRLFMGMSIFITFVAVFELMMPDVYGDIANPKSYFVNSRG ASADGFWNEGSSLYLSATRPDERNFFAGSNLPRASSVFIEPVTMGNYIIFFAAIVLVFWRWMSVSELILSIAMIVFLIVA SDGRLATGTCILMVLLAPFLKRFDQRFAFLLFFSVLLGGWFIVQLNGIHTYDKDTILSRTFFSVYSLAHLPLDSWFGLDV QSSYRYFDSGIAYFIASQSVITVLVFLLSYSFLFDMQSHEGRGFKNMAIFAFALSLLVSNSYFSIKTSALWWFTCGCLWN CSPNVLAAKRNLVEARVIAQVGVS >Mature_424_residues MLMCMKKITKENSRNLLVGIVLFLGVAYNFPLAMINAKVFTVTPVMTYAVELVIYFACFMLGLSALHRKRVVLVMSGLGF LVALTLLRFLMSLDFDPKFFRDALIPFAFLILGAAYRGSLLRLFMGMSIFITFVAVFELMMPDVYGDIANPKSYFVNSRG ASADGFWNEGSSLYLSATRPDERNFFAGSNLPRASSVFIEPVTMGNYIIFFAAIVLVFWRWMSVSELILSIAMIVFLIVA SDGRLATGTCILMVLLAPFLKRFDQRFAFLLFFSVLLGGWFIVQLNGIHTYDKDTILSRTFFSVYSLAHLPLDSWFGLDV QSSYRYFDSGIAYFIASQSVITVLVFLLSYSFLFDMQSHEGRGFKNMAIFAFALSLLVSNSYFSIKTSALWWFTCGCLWN CSPNVLAAKRNLVEARVIAQVGVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47703; Mature: 47703
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLMCMKKITKENSRNLLVGIVLFLGVAYNFPLAMINAKVFTVTPVMTYAVELVIYFACFM CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHH LGLSALHRKRVVLVMSGLGFLVALTLLRFLMSLDFDPKFFRDALIPFAFLILGAAYRGSL HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRLFMGMSIFITFVAVFELMMPDVYGDIANPKSYFVNSRGASADGFWNEGSSLYLSATRP HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCC DERNFFAGSNLPRASSVFIEPVTMGNYIIFFAAIVLVFWRWMSVSELILSIAMIVFLIVA CCCCEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SDGRLATGTCILMVLLAPFLKRFDQRFAFLLFFSVLLGGWFIVQLNGIHTYDKDTILSRT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCHHHHHHH FFSVYSLAHLPLDSWFGLDVQSSYRYFDSGIAYFIASQSVITVLVFLLSYSFLFDMQSHE HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GRGFKNMAIFAFALSLLVSNSYFSIKTSALWWFTCGCLWNCSPNVLAAKRNLVEARVIAQ CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHEEHHCHHCCCCCCHHHHHHHHHHHHHHHH VGVS HCCC >Mature Secondary Structure MLMCMKKITKENSRNLLVGIVLFLGVAYNFPLAMINAKVFTVTPVMTYAVELVIYFACFM CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEEHHHHHHHHHHHHHHHHHH LGLSALHRKRVVLVMSGLGFLVALTLLRFLMSLDFDPKFFRDALIPFAFLILGAAYRGSL HHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LRLFMGMSIFITFVAVFELMMPDVYGDIANPKSYFVNSRGASADGFWNEGSSLYLSATRP HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHEEECCCCCCCCCCCCCCEEEEEECCC DERNFFAGSNLPRASSVFIEPVTMGNYIIFFAAIVLVFWRWMSVSELILSIAMIVFLIVA CCCCEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SDGRLATGTCILMVLLAPFLKRFDQRFAFLLFFSVLLGGWFIVQLNGIHTYDKDTILSRT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEECCCHHHHHHH FFSVYSLAHLPLDSWFGLDVQSSYRYFDSGIAYFIASQSVITVLVFLLSYSFLFDMQSHE HHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GRGFKNMAIFAFALSLLVSNSYFSIKTSALWWFTCGCLWNCSPNVLAAKRNLVEARVIAQ CCCCHHHHHHHHHHHHHHCCCCEEEEECHHHEEHHCHHCCCCCCHHHHHHHHHHHHHHHH VGVS HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA