Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is wcaJ [H]
Identifier: 182682005
GI number: 182682005
Start: 1632035
End: 1633489
Strand: Reverse
Name: wcaJ [H]
Synonym: XfasM23_1480
Alternate gene names: 182682005
Gene position: 1633489-1632035 (Counterclockwise)
Preceding gene: 182682006
Following gene: 182682004
Centisome position: 64.42
GC content: 44.05
Gene sequence:
>1455_bases ATGCTTCTGGCAGATCTGAACAGTGTTACTGATATTGCTTCTTCACCGCGGTTATTGTCGAAATATTCTGCTGCCGCTGA TCTAATACTTCGTGTTTTTGATCTAACAATGGTGGTGCTGTCTGGTGTACTGATTTACAGATTGTTGTTTGGTAATTGGA TGTTAACGGCCACATATCGTATTGCTATTGGTAACACGTTATTGTATTCGGTGATTTGTTTTTCTTTTTTCCCGTTGTAT CGCAGTTGGCGTGGGCGTGCTCTGGCGCGGGAGCTGTTAGTAATTAGTAGTGCGTTCTGTGGTGTATTTATCTTGTTTTC GTTGCATACACTGATTGTTCAATTGGGACATCCTGTGTCCTGGTTATGGATTACTTTCTGGTTCCTTGGTGCGCTCTCTA CCTTGTTGAGTGCGCGTGTAGCGCTTCGTAGTCTACTCAACTGGTTGCATATGCGTGGTGTGGATGTCCAACGTATTGTT GTGGTTGGGCTGCGTCATCCTGTGATGAAAATTCACCATTATCTGAATCGTAATACATGGACAGGGATGCAATTGATTGG GTATTTCAGTACTTCCTACGATGTCTCTGTATCTGAATATGTGAGGCGTCTTCCGTGTCTTGGGATTCCGGATAGATTGT TTGATTTTTTAGAAAAAAATCACGTTGAGCAAGTATGGATTTCGATGCCTCTCGGTGAGCGTGATTATATTAAGACGTTG TTGAAGAAATTGGAGCGTTATCCGATCAATGTAAAACTTATTCCTGATTTATTCGACTTTGGCACACTCAATCAGTCGGG TGAACAAATTGGTCATGTGCCTGTCATTAATCTTCGTCAGGGCGGGGTTGATCGAGATAACTACTTTTTTGTTGCCAAGA CAATCCAGGATAAGGTGCTGGCCATGATTGCATTGCTATTGCTGTGGCCGTTGTTAATCATCATTGGGATTGGTATCAAG TTCAGTTCCCCAGGTCCGGTATTGTTCCGGCAACGCCGCCATGGCTTGAATGGGCGTGAGTTTTATGTGCTCAAATTTCG CTCGATGCGGGTGCATGACGATCAAAGTCAGCATCTGAAGCAAGCCAGTCGTAATGATAGTCGTATCACTGCTTTGGGTG CGTTCCTGCGTCGCACCAGTCTGGATGAGTTACCACAAATCTTCAATGTACTTGGCGGCAGTATGTCGATTGTTGGCCCG CGTCCTCATGCGGCTCAGCACAACAGTTATTACGAGAAGTTGATCCAGCATTACATGCAACGCCATTACGTCAAACCAGG GATTACTGGGTGGGCGCAGGTCAACGGTTTTCGTGGTGAAACACAAGAATTAAGGACAATGAAAAAGCGTATTCAGTATG ATCTTGATTACATCAGGCGCTGGTCATTGTGGTTCGATTTTAGAATTATTGTTTTGACTTTAGTACGTGTACTTGGTCAG AAAAATGCTTATTGA
Upstream 100 bases:
>100_bases ATGGTGGCAAATGCTGGTGAACGAAACCAACGTTGTCTGGTGGTGTGCGCTTGTTCCTCCCAAAATATGCGCTGCCCAGG ATATGTGAGGAGTTCTATCA
Downstream 100 bases:
>100_bases TCTTAGATGTTTCAGTCCATGCATGGTTGTGTCAGGAGAGTTTCCATGCTGATGTGTATGAAAAAGATCACCAAAGAGAA TTCACGGAATCTTCTTGTTG
Product: undecaprenyl-phosphate glucose phosphotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 484; Mature: 484
Protein sequence:
>484_residues MLLADLNSVTDIASSPRLLSKYSAAADLILRVFDLTMVVLSGVLIYRLLFGNWMLTATYRIAIGNTLLYSVICFSFFPLY RSWRGRALARELLVISSAFCGVFILFSLHTLIVQLGHPVSWLWITFWFLGALSTLLSARVALRSLLNWLHMRGVDVQRIV VVGLRHPVMKIHHYLNRNTWTGMQLIGYFSTSYDVSVSEYVRRLPCLGIPDRLFDFLEKNHVEQVWISMPLGERDYIKTL LKKLERYPINVKLIPDLFDFGTLNQSGEQIGHVPVINLRQGGVDRDNYFFVAKTIQDKVLAMIALLLLWPLLIIIGIGIK FSSPGPVLFRQRRHGLNGREFYVLKFRSMRVHDDQSQHLKQASRNDSRITALGAFLRRTSLDELPQIFNVLGGSMSIVGP RPHAAQHNSYYEKLIQHYMQRHYVKPGITGWAQVNGFRGETQELRTMKKRIQYDLDYIRRWSLWFDFRIIVLTLVRVLGQ KNAY
Sequences:
>Translated_484_residues MLLADLNSVTDIASSPRLLSKYSAAADLILRVFDLTMVVLSGVLIYRLLFGNWMLTATYRIAIGNTLLYSVICFSFFPLY RSWRGRALARELLVISSAFCGVFILFSLHTLIVQLGHPVSWLWITFWFLGALSTLLSARVALRSLLNWLHMRGVDVQRIV VVGLRHPVMKIHHYLNRNTWTGMQLIGYFSTSYDVSVSEYVRRLPCLGIPDRLFDFLEKNHVEQVWISMPLGERDYIKTL LKKLERYPINVKLIPDLFDFGTLNQSGEQIGHVPVINLRQGGVDRDNYFFVAKTIQDKVLAMIALLLLWPLLIIIGIGIK FSSPGPVLFRQRRHGLNGREFYVLKFRSMRVHDDQSQHLKQASRNDSRITALGAFLRRTSLDELPQIFNVLGGSMSIVGP RPHAAQHNSYYEKLIQHYMQRHYVKPGITGWAQVNGFRGETQELRTMKKRIQYDLDYIRRWSLWFDFRIIVLTLVRVLGQ KNAY >Mature_484_residues MLLADLNSVTDIASSPRLLSKYSAAADLILRVFDLTMVVLSGVLIYRLLFGNWMLTATYRIAIGNTLLYSVICFSFFPLY RSWRGRALARELLVISSAFCGVFILFSLHTLIVQLGHPVSWLWITFWFLGALSTLLSARVALRSLLNWLHMRGVDVQRIV VVGLRHPVMKIHHYLNRNTWTGMQLIGYFSTSYDVSVSEYVRRLPCLGIPDRLFDFLEKNHVEQVWISMPLGERDYIKTL LKKLERYPINVKLIPDLFDFGTLNQSGEQIGHVPVINLRQGGVDRDNYFFVAKTIQDKVLAMIALLLLWPLLIIIGIGIK FSSPGPVLFRQRRHGLNGREFYVLKFRSMRVHDDQSQHLKQASRNDSRITALGAFLRRTSLDELPQIFNVLGGSMSIVGP RPHAAQHNSYYEKLIQHYMQRHYVKPGITGWAQVNGFRGETQELRTMKKRIQYDLDYIRRWSLWFDFRIIVLTLVRVLGQ KNAY
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG2148
COG function: function code M; Sugar transferases involved in lipopolysaccharide synthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial sugar transferase family [H]
Homologues:
Organism=Escherichia coli, GI1788360, Length=415, Percent_Identity=38.7951807228916, Blast_Score=281, Evalue=8e-77,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003362 - InterPro: IPR017475 - InterPro: IPR017473 [H]
Pfam domain/function: PF02397 Bac_transf [H]
EC number: NA
Molecular weight: Translated: 55949; Mature: 55949
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLADLNSVTDIASSPRLLSKYSAAADLILRVFDLTMVVLSGVLIYRLLFGNWMLTATYR CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE IAIGNTLLYSVICFSFFPLYRSWRGRALARELLVISSAFCGVFILFSLHTLIVQLGHPVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH WLWITFWFLGALSTLLSARVALRSLLNWLHMRGVDVQRIVVVGLRHPVMKIHHYLNRNTW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC TGMQLIGYFSTSYDVSVSEYVRRLPCLGIPDRLFDFLEKNHVEQVWISMPLGERDYIKTL CHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHEEEECCCCCHHHHHHH LKKLERYPINVKLIPDLFDFGTLNQSGEQIGHVPVINLRQGGVDRDNYFFVAKTIQDKVL HHHHHHCCCCEEECCCHHCCCCCCCCCHHHCCCCEEEECCCCCCCCCEEEEEHHHHHHHH AMIALLLLWPLLIIIGIGIKFSSPGPVLFRQRRHGLNGREFYVLKFRSMRVHDDQSQHLK HHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHH QASRNDSRITALGAFLRRTSLDELPQIFNVLGGSMSIVGPRPHAAQHNSYYEKLIQHYMQ HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH RHYVKPGITGWAQVNGFRGETQELRTMKKRIQYDLDYIRRWSLWFDFRIIVLTLVRVLGQ HHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KNAY CCCC >Mature Secondary Structure MLLADLNSVTDIASSPRLLSKYSAAADLILRVFDLTMVVLSGVLIYRLLFGNWMLTATYR CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE IAIGNTLLYSVICFSFFPLYRSWRGRALARELLVISSAFCGVFILFSLHTLIVQLGHPVS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH WLWITFWFLGALSTLLSARVALRSLLNWLHMRGVDVQRIVVVGLRHPVMKIHHYLNRNTW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC TGMQLIGYFSTSYDVSVSEYVRRLPCLGIPDRLFDFLEKNHVEQVWISMPLGERDYIKTL CHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCHHHEEEECCCCCHHHHHHH LKKLERYPINVKLIPDLFDFGTLNQSGEQIGHVPVINLRQGGVDRDNYFFVAKTIQDKVL HHHHHHCCCCEEECCCHHCCCCCCCCCHHHCCCCEEEECCCCCCCCCEEEEEHHHHHHHH AMIALLLLWPLLIIIGIGIKFSSPGPVLFRQRRHGLNGREFYVLKFRSMRVHDDQSQHLK HHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHH QASRNDSRITALGAFLRRTSLDELPQIFNVLGGSMSIVGPRPHAAQHNSYYEKLIQHYMQ HHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH RHYVKPGITGWAQVNGFRGETQELRTMKKRIQYDLDYIRRWSLWFDFRIIVLTLVRVLGQ HHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC KNAY CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8759852; 9097040; 9278503 [H]