| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is prc [H]
Identifier: 182681648
GI number: 182681648
Start: 1251928
End: 1254111
Strand: Direct
Name: prc [H]
Synonym: XfasM23_1106
Alternate gene names: 182681648
Gene position: 1251928-1254111 (Clockwise)
Preceding gene: 182681647
Following gene: 182681649
Centisome position: 49.37
GC content: 49.22
Gene sequence:
>2184_bases ATGAGCTTACGAATCCTTAACTCCTTGAAAGTTGCCCTACTAACCCTGGCTATCACTACCGCTCCAGCGTTGATGGCCAA ATCGGACAGTGCATCTCCTCAAGTGGCGACGCCAGATCAAACCACAGCGACCAAGCTGGTGTATGGTCTGCTTTCAGATA GTCGTTATGCTTATCGGCTGCGCCCGCTTGACGAAACGATGTCCAAAGACATTTTCAAGCGCTACTTGGAAGCCCTAGAC AACAATAAGCAATTTTTTACTGAAGCCGATATCGACAACTTCTCAGCATTCAAAGCTGAGATACCTGATTCAATCCGCAA CGGCAATCTCAAGCCAGCGTTTAGTATATTTACGGTGTATAAAAAGCGCGTTGCTGAACGTGTTACCTATGCAAATCAGT TACTGAAACAAAACTTCGATTTTTCCGGGCAAGAAAAATACGAATACGATCGTAGCAAAGCGCCATGGCCAGCCAGCCCG CAAGATCTGGACGACATCTGGCGACGATCAATAATGAACGACTGGCTACGCCTGAAGTTGGCCGGAAAAAAGCCCGAAGA CATTCGGAAAACTCTTAAAAAACGCTACGCCAACCTTCTTAAGACAGTGAACGAACTAAAAGGTGAAGACGTCTTTCAGT TGTATCTGAACGCCTACACTAATTCGATCGATCCTCATACCGACTACTTCACTCCACGCACAGCCGATGCTTTCAACCAG CAGATGTCATTGTCACTAGAAGGTATCGGTGCCCAGCTGCAAAAGCAGGAAGACATGGTGATCATCCGTGAGGTGATTCC TGGAGGCCCCACTGCGTTGGATGGCACACTGAAACCTGGTGATCGCATCGTCGGCGTTGGTCAGGGCAAAGGCGGCCCAA TTGAAGATGTCATCGGCTTACGCATCGACGATGTCGTCTCCAAGATCCGCGGCAAGAAAGACACCCAGGTACGACTTGAA TATATTCCAGCCGAATCTGGAATCGACGGCGCACACCGTATCGTGACTCTTACACGACAGAAGGTACGCTTAGCTGAGCA GGCCGCGAAGGGCGAAACCATTACCATAGAGGGTAGCAACGGCGACGCACAGCGCCGCATCGGCATCATCAAGCTGCCAA CGTTCTACGAGGATTTCGAAGGGCGTCGCCGCAACCTCGCCAACTATACGTCTGCAACACGAGATGTAGCGAAGCTTTTA ACCAACTTCAAAACTGACAAAGTCGATGGCGTGGTACTCGATCTGCGTAACAACGGCGGCGGATCGCTGGATGAAGCCAT TCAGCTCACTGGTCTATTCATCGAACAAGGTCCTGTGGTGCAAGTACGTGAATCCGGGGGCCGTGTCACTGTCAACGGTG ATCGAGACGACAAAGTCACCTGGGACGGCCCGCTGGCAGTATTGATCAATCGTGGCTCCGCTTCTGCATCAGAAATTTTT GCAGGTGCCATCCAAGACTATGGGCGTGGTTTGGTGATTGGAGAAACCAGCTTTGGTAAAGGCACAGTCCAAAATATTGT TGATCTGGATCGTTGGCCGGCAAACGAAAGCAGACGATTTGGCCAAGTCAAATTGACCATTGCTCAATTCTTCCGTATCA GCGGATCCAGCACCCAGCACAAAGGAGTGTTACCAGACATTGCGTTCCCAGCAAGCGTAGGTGCAACTGAGTTTGGGGAG AGCACTTATGAAAATGCCTTGCCTTGGACTCGAATTGCCTCGCTCCAACACACCCAATATGGCAATTTCAGCCCAATATT ATCGAAACTGAAAAAAATTCATATCAGTCGCACTGCCAATGACATTGAATTCAAATGGTGGCAAGAGGATGTACATAATT TCAGTCTGGAAAAGGAAAAGAAGTACGTCATACTCAACGAAGCCGAACGTCTTGCAGAACGTAGAAAACAAGAAACTCAA CATAGAGAACGCCAAACTATTCGGAAAAACCTTGGCTTGCAGCTAGATCCTTTGTCTGAGGAGAGTGACGACGGATTGAT TGGCAACGAGCGTGATATCGCCAAGGACACTGCGCGCGAAAAGCTGGCCGACAAGCGTCCTGACCCTTTATTGCATGAAT CAGCCGCAATTCTGACCGATACAATTAACCTACTGGAAAAGGACCAGATACTATCGGCACAGGTACTTTTACAGTCCACC ACACCGGGACACTGGGCCAATTGA
Upstream 100 bases:
>100_bases CGCCCTGTACCTTCCCGTTCATATTTTTCGGCAATCGTGGCGTTAGTCTGGTTTGCAATTTGCTTGACCTAAAACGGCCT TGTCCTCTTAGAGTAAATTA
Downstream 100 bases:
>100_bases ATTGCCAGTAGTGTTGGGTAAACCAGCCCAACACTACAGCCTTTTTGACTTGCTTAGATGCTTTGCCAGATAACGGCTCT TAAAATTTGGTACTCCCATT
Product: carboxyl-terminal protease
Products: NA
Alternate protein names: C-terminal-processing peptidase; Protease Re [H]
Number of amino acids: Translated: 727; Mature: 726
Protein sequence:
>727_residues MSLRILNSLKVALLTLAITTAPALMAKSDSASPQVATPDQTTATKLVYGLLSDSRYAYRLRPLDETMSKDIFKRYLEALD NNKQFFTEADIDNFSAFKAEIPDSIRNGNLKPAFSIFTVYKKRVAERVTYANQLLKQNFDFSGQEKYEYDRSKAPWPASP QDLDDIWRRSIMNDWLRLKLAGKKPEDIRKTLKKRYANLLKTVNELKGEDVFQLYLNAYTNSIDPHTDYFTPRTADAFNQ QMSLSLEGIGAQLQKQEDMVIIREVIPGGPTALDGTLKPGDRIVGVGQGKGGPIEDVIGLRIDDVVSKIRGKKDTQVRLE YIPAESGIDGAHRIVTLTRQKVRLAEQAAKGETITIEGSNGDAQRRIGIIKLPTFYEDFEGRRRNLANYTSATRDVAKLL TNFKTDKVDGVVLDLRNNGGGSLDEAIQLTGLFIEQGPVVQVRESGGRVTVNGDRDDKVTWDGPLAVLINRGSASASEIF AGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPANESRRFGQVKLTIAQFFRISGSSTQHKGVLPDIAFPASVGATEFGE STYENALPWTRIASLQHTQYGNFSPILSKLKKIHISRTANDIEFKWWQEDVHNFSLEKEKKYVILNEAERLAERRKQETQ HRERQTIRKNLGLQLDPLSEESDDGLIGNERDIAKDTAREKLADKRPDPLLHESAAILTDTINLLEKDQILSAQVLLQST TPGHWAN
Sequences:
>Translated_727_residues MSLRILNSLKVALLTLAITTAPALMAKSDSASPQVATPDQTTATKLVYGLLSDSRYAYRLRPLDETMSKDIFKRYLEALD NNKQFFTEADIDNFSAFKAEIPDSIRNGNLKPAFSIFTVYKKRVAERVTYANQLLKQNFDFSGQEKYEYDRSKAPWPASP QDLDDIWRRSIMNDWLRLKLAGKKPEDIRKTLKKRYANLLKTVNELKGEDVFQLYLNAYTNSIDPHTDYFTPRTADAFNQ QMSLSLEGIGAQLQKQEDMVIIREVIPGGPTALDGTLKPGDRIVGVGQGKGGPIEDVIGLRIDDVVSKIRGKKDTQVRLE YIPAESGIDGAHRIVTLTRQKVRLAEQAAKGETITIEGSNGDAQRRIGIIKLPTFYEDFEGRRRNLANYTSATRDVAKLL TNFKTDKVDGVVLDLRNNGGGSLDEAIQLTGLFIEQGPVVQVRESGGRVTVNGDRDDKVTWDGPLAVLINRGSASASEIF AGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPANESRRFGQVKLTIAQFFRISGSSTQHKGVLPDIAFPASVGATEFGE STYENALPWTRIASLQHTQYGNFSPILSKLKKIHISRTANDIEFKWWQEDVHNFSLEKEKKYVILNEAERLAERRKQETQ HRERQTIRKNLGLQLDPLSEESDDGLIGNERDIAKDTAREKLADKRPDPLLHESAAILTDTINLLEKDQILSAQVLLQST TPGHWAN >Mature_726_residues SLRILNSLKVALLTLAITTAPALMAKSDSASPQVATPDQTTATKLVYGLLSDSRYAYRLRPLDETMSKDIFKRYLEALDN NKQFFTEADIDNFSAFKAEIPDSIRNGNLKPAFSIFTVYKKRVAERVTYANQLLKQNFDFSGQEKYEYDRSKAPWPASPQ DLDDIWRRSIMNDWLRLKLAGKKPEDIRKTLKKRYANLLKTVNELKGEDVFQLYLNAYTNSIDPHTDYFTPRTADAFNQQ MSLSLEGIGAQLQKQEDMVIIREVIPGGPTALDGTLKPGDRIVGVGQGKGGPIEDVIGLRIDDVVSKIRGKKDTQVRLEY IPAESGIDGAHRIVTLTRQKVRLAEQAAKGETITIEGSNGDAQRRIGIIKLPTFYEDFEGRRRNLANYTSATRDVAKLLT NFKTDKVDGVVLDLRNNGGGSLDEAIQLTGLFIEQGPVVQVRESGGRVTVNGDRDDKVTWDGPLAVLINRGSASASEIFA GAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPANESRRFGQVKLTIAQFFRISGSSTQHKGVLPDIAFPASVGATEFGES TYENALPWTRIASLQHTQYGNFSPILSKLKKIHISRTANDIEFKWWQEDVHNFSLEKEKKYVILNEAERLAERRKQETQH RERQTIRKNLGLQLDPLSEESDDGLIGNERDIAKDTAREKLADKRPDPLLHESAAILTDTINLLEKDQILSAQVLLQSTT PGHWAN
Specific function: Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3 (PBP3). May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=661, Percent_Identity=39.4856278366112, Blast_Score=457, Evalue=1e-129,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 - InterPro: IPR020992 [H]
Pfam domain/function: PF11818 DUF3340; PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 81356; Mature: 81225
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRILNSLKVALLTLAITTAPALMAKSDSASPQVATPDQTTATKLVYGLLSDSRYAYRL CCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE RPLDETMSKDIFKRYLEALDNNKQFFTEADIDNFSAFKAEIPDSIRNGNLKPAFSIFTVY CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCHHHHCCCCCHHHHHHHHH KKRVAERVTYANQLLKQNFDFSGQEKYEYDRSKAPWPASPQDLDDIWRRSIMNDWLRLKL HHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEE AGKKPEDIRKTLKKRYANLLKTVNELKGEDVFQLYLNAYTNSIDPHTDYFTPRTADAFNQ CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCH QMSLSLEGIGAQLQKQEDMVIIREVIPGGPTALDGTLKPGDRIVGVGQGKGGPIEDVIGL HHEEEHHHCCHHHHCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCC RIDDVVSKIRGKKDTQVRLEYIPAESGIDGAHRIVTLTRQKVRLAEQAAKGETITIEGSN HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GDAQRRIGIIKLPTFYEDFEGRRRNLANYTSATRDVAKLLTNFKTDKVDGVVLDLRNNGG CCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC GSLDEAIQLTGLFIEQGPVVQVRESGGRVTVNGDRDDKVTWDGPLAVLINRGSASASEIF CCHHHHHHHHEEEECCCCEEEEECCCCEEEECCCCCCCEEECCCEEEEEECCCCCHHHHH AGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPANESRRFGQVKLTIAQFFRISGSSTQH HHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCCCCCC KGVLPDIAFPASVGATEFGESTYENALPWTRIASLQHTQYGNFSPILSKLKKIHISRTAN CCCCCCCCCCCCCCCHHCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC DIEFKWWQEDVHNFSLEKEKKYVILNEAERLAERRKQETQHRERQTIRKNLGLQLDPLSE CCEEEEEHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC ESDDGLIGNERDIAKDTAREKLADKRPDPLLHESAAILTDTINLLEKDQILSAQVLLQST CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECC TPGHWAN CCCCCCC >Mature Secondary Structure SLRILNSLKVALLTLAITTAPALMAKSDSASPQVATPDQTTATKLVYGLLSDSRYAYRL CEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEE RPLDETMSKDIFKRYLEALDNNKQFFTEADIDNFSAFKAEIPDSIRNGNLKPAFSIFTVY CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCHHHHCCCCCHHHHHHHHH KKRVAERVTYANQLLKQNFDFSGQEKYEYDRSKAPWPASPQDLDDIWRRSIMNDWLRLKL HHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEE AGKKPEDIRKTLKKRYANLLKTVNELKGEDVFQLYLNAYTNSIDPHTDYFTPRTADAFNQ CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCH QMSLSLEGIGAQLQKQEDMVIIREVIPGGPTALDGTLKPGDRIVGVGQGKGGPIEDVIGL HHEEEHHHCCHHHHCCCCEEEEEHHCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCC RIDDVVSKIRGKKDTQVRLEYIPAESGIDGAHRIVTLTRQKVRLAEQAAKGETITIEGSN HHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCC GDAQRRIGIIKLPTFYEDFEGRRRNLANYTSATRDVAKLLTNFKTDKVDGVVLDLRNNGG CCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCC GSLDEAIQLTGLFIEQGPVVQVRESGGRVTVNGDRDDKVTWDGPLAVLINRGSASASEIF CCHHHHHHHHEEEECCCCEEEEECCCCEEEECCCCCCCEEECCCEEEEEECCCCCHHHHH AGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPANESRRFGQVKLTIAQFFRISGSSTQH HHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHCCCCCCCC KGVLPDIAFPASVGATEFGESTYENALPWTRIASLQHTQYGNFSPILSKLKKIHISRTAN CCCCCCCCCCCCCCCHHCCCHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC DIEFKWWQEDVHNFSLEKEKKYVILNEAERLAERRKQETQHRERQTIRKNLGLQLDPLSE CCEEEEEHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCC ESDDGLIGNERDIAKDTAREKLADKRPDPLLHESAAILTDTINLLEKDQILSAQVLLQST CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECC TPGHWAN CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]