Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182681635
Identifier: 182681635
GI number: 182681635
Start: 1237821
End: 1238780
Strand: Direct
Name: 182681635
Synonym: XfasM23_1093
Alternate gene names: NA
Gene position: 1237821-1238780 (Clockwise)
Preceding gene: 182681633
Following gene: 182681636
Centisome position: 48.82
GC content: 55.52
Gene sequence:
>960_bases ATGTCGGATGTGACACGATCTGGGAATGTCTTGGCTATCAGCGACGGCCGCACCGGCAATACACGCCAAGCAGAAGCACT AGCTAGCACTCTGGTGGGCAGCCTTTATACAACACAGGTACTCAAGCCACGTATCCCGTGGCGCTGGACGGCGCCCTATT GTCTCCCCGGTGCCAAGCACGCCTTTGGGCCTAAATTTTGGCACGCATTGAGATACCCACCATTTCTTGCAATTGGTTGC GGACGCCAAGCGGCATTGGCCACACGTCTGCTGCACAAGCAAGGGGCGTGCGTCGTTCAAATTTTGGATCCGCGCTTACC AACACGTCACTGGGACCTGCTCGTAGTGCCCGAGCACGATCATATACGTGGCCATAATGTGCTCACTCTACTTGGCAGTC TGCACCCGGTGAACGACGTTTGGTTAGCAACGGGGCGTGCTCAGTTTCCGGAACTGGGGGACTTACCTGGCCAGCGGGTG GCGCTGTTGGTCGGAGCACCAACACCGCAAGCACCTTGGCAGCCAGCTCAATTGGAGGAATTATGTACTACCCTGGTGAA GGAATTGTCCTGCGGTGGCAGTGTGTTGGCCACCACTTCACGACGCACCCCACCAGAGTTGGCAACGCAACTACGCAAAC ACTTAACGACAATACCAGGTTTGTTTTGGAACAACACTGACAAAGGCGCCAACCCCTATCCAGGGATCCTCGGCTGGGCA GATGCAATCATCGCCACGGCCGACTCGGTCAACCTTCTATCGGAAGCCTGTGCCACCCGTGTTCCAGTCACTGCCGCATT CGCCAATCAAACCCGTGGCCGCATACGGTGTTTCATTGATGCCCTAGGTGCACGTTTATGCACAGTTGAAAATTTACTCA CTATCGATACACTGGCGCAGCCTCTACGAGAGACCGAACGCATCGCCAATGAAGTGCGTGCATGGTTTGGAGTCGTATAA
Upstream 100 bases:
>100_bases CTTACCAGTAACGCAAACAATCACATATTGGTAGTTAGAACTTTAAAAGTGTGGAGTATTAAAGTAACGCATATTTCATG CCTATTTTTCTAACAAACCA
Downstream 100 bases:
>100_bases GAGAGCTTTCAATCCAAGGACGAAGTGATCTCAAAATGAAAAATAAGTTTACGCGCGTCTGCCTTTTCCTGCTGCTCTTA AGCTTAGTAGTGACAATAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSDVTRSGNVLAISDGRTGNTRQAEALASTLVGSLYTTQVLKPRIPWRWTAPYCLPGAKHAFGPKFWHALRYPPFLAIGC GRQAALATRLLHKQGACVVQILDPRLPTRHWDLLVVPEHDHIRGHNVLTLLGSLHPVNDVWLATGRAQFPELGDLPGQRV ALLVGAPTPQAPWQPAQLEELCTTLVKELSCGGSVLATTSRRTPPELATQLRKHLTTIPGLFWNNTDKGANPYPGILGWA DAIIATADSVNLLSEACATRVPVTAAFANQTRGRIRCFIDALGARLCTVENLLTIDTLAQPLRETERIANEVRAWFGVV
Sequences:
>Translated_319_residues MSDVTRSGNVLAISDGRTGNTRQAEALASTLVGSLYTTQVLKPRIPWRWTAPYCLPGAKHAFGPKFWHALRYPPFLAIGC GRQAALATRLLHKQGACVVQILDPRLPTRHWDLLVVPEHDHIRGHNVLTLLGSLHPVNDVWLATGRAQFPELGDLPGQRV ALLVGAPTPQAPWQPAQLEELCTTLVKELSCGGSVLATTSRRTPPELATQLRKHLTTIPGLFWNNTDKGANPYPGILGWA DAIIATADSVNLLSEACATRVPVTAAFANQTRGRIRCFIDALGARLCTVENLLTIDTLAQPLRETERIANEVRAWFGVV >Mature_318_residues SDVTRSGNVLAISDGRTGNTRQAEALASTLVGSLYTTQVLKPRIPWRWTAPYCLPGAKHAFGPKFWHALRYPPFLAIGCG RQAALATRLLHKQGACVVQILDPRLPTRHWDLLVVPEHDHIRGHNVLTLLGSLHPVNDVWLATGRAQFPELGDLPGQRVA LLVGAPTPQAPWQPAQLEELCTTLVKELSCGGSVLATTSRRTPPELATQLRKHLTTIPGLFWNNTDKGANPYPGILGWAD AIIATADSVNLLSEACATRVPVTAAFANQTRGRIRCFIDALGARLCTVENLLTIDTLAQPLRETERIANEVRAWFGVV
Specific function: Unknown
COG id: COG3660
COG function: function code M; Predicted nucleoside-diphosphate-sugar epimerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34765; Mature: 34634
Theoretical pI: Translated: 8.96; Mature: 8.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVTRSGNVLAISDGRTGNTRQAEALASTLVGSLYTTQVLKPRIPWRWTAPYCLPGAKH CCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC AFGPKFWHALRYPPFLAIGCGRQAALATRLLHKQGACVVQILDPRLPTRHWDLLVVPEHD CCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCC HIRGHNVLTLLGSLHPVNDVWLATGRAQFPELGDLPGQRVALLVGAPTPQAPWQPAQLEE CCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHH LCTTLVKELSCGGSVLATTSRRTPPELATQLRKHLTTIPGLFWNNTDKGANPYPGILGWA HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH DAIIATADSVNLLSEACATRVPVTAAFANQTRGRIRCFIDALGARLCTVENLLTIDTLAQ HHHHHCCCHHHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PLRETERIANEVRAWFGVV HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDVTRSGNVLAISDGRTGNTRQAEALASTLVGSLYTTQVLKPRIPWRWTAPYCLPGAKH CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCC AFGPKFWHALRYPPFLAIGCGRQAALATRLLHKQGACVVQILDPRLPTRHWDLLVVPEHD CCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEECCCC HIRGHNVLTLLGSLHPVNDVWLATGRAQFPELGDLPGQRVALLVGAPTPQAPWQPAQLEE CCCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHH LCTTLVKELSCGGSVLATTSRRTPPELATQLRKHLTTIPGLFWNNTDKGANPYPGILGWA HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHH DAIIATADSVNLLSEACATRVPVTAAFANQTRGRIRCFIDALGARLCTVENLLTIDTLAQ HHHHHCCCHHHHHHHHHHHCCCEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH PLRETERIANEVRAWFGVV HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA