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The map label for this gene is pal [H]

Identifier: 182681496

GI number: 182681496

Start: 1115480

End: 1116019

Strand: Direct

Name: pal [H]

Synonym: XfasM23_0950

Alternate gene names: 182681496

Gene position: 1115480-1116019 (Clockwise)

Preceding gene: 182681495

Following gene: 182681497

Centisome position: 43.99

GC content: 47.04

Gene sequence:

>540_bases
ATGAATAATTCCACACGTTTTCTCCTAATCTCATTGCTTTCTACCAGCGCGCTTGTCGCTTGTTCAAAAAAAGTTAAGGA
GCAACCACATGTGCCTGTCAAACCTATGGCACCAACTGTTTCTACGCCCACACCACCCACCGCTACGGCGCCAACCGATT
CTTCTGGGCTTTACACAGCTGCTGACTTAGATACCGATGCTTGCTTGCGTCAACGTGTCGTCTATTTCGACTTTGATAAA
GATGATGTGAAAAAAGAATTTCAGACGGTTCTTAGTTGCCATGCAAAATATCTTCGCAACCGTCCCTCTGCACACATCAC
ATTACAGGGCAATACCGATGAGCGCGGTTCGCGTGAGTATAATATAGCTCTAGGTGAACGGCGGGGTAACTCTGTGTTGT
ATTCATTACAGGCGAATGGTGCTTCGTCGGGGCAGTTGAACGTTGTTAGTTACGGTGAAGAGCGTCCGGTTTGCACTGAA
TCAACAGAAAGTTGCTGGTCACGTAACCGGCGCGTTGAAATCGTTTATACAGCGAAGTAA

Upstream 100 bases:

>100_bases
AGCCTGCTTGGGGGCCTTACCGGAGCGTACATTAATAAATAATGTTAATATTTTGATGTGTTAACCACTCATTGGCTTGG
GAGCTACCATAGGTATCTTT

Downstream 100 bases:

>100_bases
GCCATGCGTTTGGGGGGATCTACATTTTGTGTCGTCGCGATGGCCCTCGGGACCGTCGCGCCCTCTTCTGCTCAGATGTC
CAGCTTGGCCGACCGTGTCA

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: OMP P6; 15 kDa peptidoglycan-associated lipoprotein; PC protein [H]

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MNNSTRFLLISLLSTSALVACSKKVKEQPHVPVKPMAPTVSTPTPPTATAPTDSSGLYTAADLDTDACLRQRVVYFDFDK
DDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDERGSREYNIALGERRGNSVLYSLQANGASSGQLNVVSYGEERPVCTE
STESCWSRNRRVEIVYTAK

Sequences:

>Translated_179_residues
MNNSTRFLLISLLSTSALVACSKKVKEQPHVPVKPMAPTVSTPTPPTATAPTDSSGLYTAADLDTDACLRQRVVYFDFDK
DDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDERGSREYNIALGERRGNSVLYSLQANGASSGQLNVVSYGEERPVCTE
STESCWSRNRRVEIVYTAK
>Mature_179_residues
MNNSTRFLLISLLSTSALVACSKKVKEQPHVPVKPMAPTVSTPTPPTATAPTDSSGLYTAADLDTDACLRQRVVYFDFDK
DDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDERGSREYNIALGERRGNSVLYSLQANGASSGQLNVVSYGEERPVCTE
STESCWSRNRRVEIVYTAK

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=104, Percent_Identity=48.0769230769231, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19763; Mature: 19763

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSTRFLLISLLSTSALVACSKKVKEQPHVPVKPMAPTVSTPTPPTATAPTDSSGLYTA
CCCCHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ADLDTDACLRQRVVYFDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDERGSREY
ECCCHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE
NIALGERRGNSVLYSLQANGASSGQLNVVSYGEERPVCTESTESCWSRNRRVEIVYTAK
EEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCEEEEEEECC
>Mature Secondary Structure
MNNSTRFLLISLLSTSALVACSKKVKEQPHVPVKPMAPTVSTPTPPTATAPTDSSGLYTA
CCCCHHEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
ADLDTDACLRQRVVYFDFDKDDVKKEFQTVLSCHAKYLRNRPSAHITLQGNTDERGSREY
ECCCHHHHHHCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEE
NIALGERRGNSVLYSLQANGASSGQLNVVSYGEERPVCTESTESCWSRNRRVEIVYTAK
EEEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2828309; 3257200; 7542800 [H]