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The map label for this gene is ybgF [C]

Identifier: 182681497

GI number: 182681497

Start: 1116023

End: 1116838

Strand: Direct

Name: ybgF [C]

Synonym: XfasM23_0951

Alternate gene names: 182681497

Gene position: 1116023-1116838 (Clockwise)

Preceding gene: 182681496

Following gene: 182681498

Centisome position: 44.01

GC content: 47.55

Gene sequence:

>816_bases
ATGCGTTTGGGGGGATCTACATTTTGTGTCGTCGCGATGGCCCTCGGGACCGTCGCGCCCTCTTCTGCTCAGATGTCCAG
CTTGGCCGACCGTGTCATGGCACTAGAGCAGCGCGCTTCTGACCCGCAAGTTAATATCGATCTAATTAACCAAATCAATG
ATTTGCGCTCGCAGATTCGTCAGATGCAAGGTTCCATTGAAGAGATGCAGCATGGCTATGAGCAGCTGAAGCAACAATCC
AAGGATCAGTATCTGGATTTAGACAGTCGCTTGAAGCCTATTGAAAGTGGTTCAGTCAGAGAGCCATCTAGGGTTCCAGC
TAACCCGGTTTCTCAAGTTTCCCCATCTCACTCTAATCAACTTATAGCAATGAGCGAGCAATCGCCTAACGTACATGGCG
ATGCGAGTGCATTAACCATCAGTAACGAAGAGCGCATTGCTTACAATGTTGCGTTTGACGCTTTAAAGAACAGTAAATAC
GCTGATGCCGCCGAGTTGTTTATGAGTTTCTTACAGCTCTACCCGAATGGAGTTTACACCCCTAATGCTCTTTACTGGCT
TGGGGAGAGTTACTATGCCATGCATGATTTCGTCTCTGCTGAAGCTCAGTTTCGCACTTTACTTAGCCGTTATCCAACCC
ACGATAAAGCATCAGGAAGCTTACTTAAAGAGGCCTTATGCCAAGCTAATCAGGGGAAAAATGATGCTGCACAGCATTCT
TTAGAGCAGGTTTTATCCCAATATCCAGGTACCGATGCGGCGCGTCTAGCACAAGAGCGCTTACAATCAATGAAGTTAAG
TCAGGCAATGCGCTGA

Upstream 100 bases:

>100_bases
TGTTAGTTACGGTGAAGAGCGTCCGGTTTGCACTGAATCAACAGAAAGTTGCTGGTCACGTAACCGGCGCGTTGAAATCG
TTTATACAGCGAAGTAAGCC

Downstream 100 bases:

>100_bases
ATAATCGTATCTTTTTTTCATCGCTTTGAATGACCAGAGCGGCATAATAATCAATTAATGAATGCCACCAGGTCACAGTT
AAAGATCTCCGAAATATTTT

Product: tol-pal system protein YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MRLGGSTFCVVAMALGTVAPSSAQMSSLADRVMALEQRASDPQVNIDLINQINDLRSQIRQMQGSIEEMQHGYEQLKQQS
KDQYLDLDSRLKPIESGSVREPSRVPANPVSQVSPSHSNQLIAMSEQSPNVHGDASALTISNEERIAYNVAFDALKNSKY
ADAAELFMSFLQLYPNGVYTPNALYWLGESYYAMHDFVSAEAQFRTLLSRYPTHDKASGSLLKEALCQANQGKNDAAQHS
LEQVLSQYPGTDAARLAQERLQSMKLSQAMR

Sequences:

>Translated_271_residues
MRLGGSTFCVVAMALGTVAPSSAQMSSLADRVMALEQRASDPQVNIDLINQINDLRSQIRQMQGSIEEMQHGYEQLKQQS
KDQYLDLDSRLKPIESGSVREPSRVPANPVSQVSPSHSNQLIAMSEQSPNVHGDASALTISNEERIAYNVAFDALKNSKY
ADAAELFMSFLQLYPNGVYTPNALYWLGESYYAMHDFVSAEAQFRTLLSRYPTHDKASGSLLKEALCQANQGKNDAAQHS
LEQVLSQYPGTDAARLAQERLQSMKLSQAMR
>Mature_271_residues
MRLGGSTFCVVAMALGTVAPSSAQMSSLADRVMALEQRASDPQVNIDLINQINDLRSQIRQMQGSIEEMQHGYEQLKQQS
KDQYLDLDSRLKPIESGSVREPSRVPANPVSQVSPSHSNQLIAMSEQSPNVHGDASALTISNEERIAYNVAFDALKNSKY
ADAAELFMSFLQLYPNGVYTPNALYWLGESYYAMHDFVSAEAQFRTLLSRYPTHDKASGSLLKEALCQANQGKNDAAQHS
LEQVLSQYPGTDAARLAQERLQSMKLSQAMR

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=250, Percent_Identity=30, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29981; Mature: 29981

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGGSTFCVVAMALGTVAPSSAQMSSLADRVMALEQRASDPQVNIDLINQINDLRSQIR
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QMQGSIEEMQHGYEQLKQQSKDQYLDLDSRLKPIESGSVREPSRVPANPVSQVSPSHSNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
LIAMSEQSPNVHGDASALTISNEERIAYNVAFDALKNSKYADAAELFMSFLQLYPNGVYT
EEEECCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
PNALYWLGESYYAMHDFVSAEAQFRTLLSRYPTHDKASGSLLKEALCQANQGKNDAAQHS
CCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LEQVLSQYPGTDAARLAQERLQSMKLSQAMR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRLGGSTFCVVAMALGTVAPSSAQMSSLADRVMALEQRASDPQVNIDLINQINDLRSQIR
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
QMQGSIEEMQHGYEQLKQQSKDQYLDLDSRLKPIESGSVREPSRVPANPVSQVSPSHSNQ
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
LIAMSEQSPNVHGDASALTISNEERIAYNVAFDALKNSKYADAAELFMSFLQLYPNGVYT
EEEECCCCCCCCCCCCEEEECCCCCEEHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
PNALYWLGESYYAMHDFVSAEAQFRTLLSRYPTHDKASGSLLKEALCQANQGKNDAAQHS
CCHHEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHH
LEQVLSQYPGTDAARLAQERLQSMKLSQAMR
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]