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The map label for this gene is rpoZ [H]

Identifier: 182681308

GI number: 182681308

Start: 892789

End: 893124

Strand: Reverse

Name: rpoZ [H]

Synonym: XfasM23_0755

Alternate gene names: 182681308

Gene position: 893124-892789 (Counterclockwise)

Preceding gene: 182681309

Following gene: 182681305

Centisome position: 35.22

GC content: 51.49

Gene sequence:

>336_bases
ATGGCGCGCTTAGCGGTTATTCTGGAGTGGAGTCCGATGGCACGTATCACTGTTGAAGATTGCCTGGAAGTTGTTAACAA
CCGTTTCGAACTGGTCATGATGGCATCCAAACGTGCCCGTCAGCTCGCTAACGGTGTACCGCCGCTCATTGAAAATACCA
ATAGCGAAGATAAGCCGACCGTAATGGCATTACGTGAAATTGCTGCACGCAAGATCAACAGTAAGATGATCGACGAGATC
GAGAAGGCCGAACGCGAGCGGGCTGAGCGTGAAGCTATGGAATGGGCCGCCGCTGAAGTCGTCGCTGACGAAGATATGTC
TAAAAGCGACGATTGA

Upstream 100 bases:

>100_bases
GTTCCATCAGCACAGACGCTGCGCTGCTGCTGCGACGCGTAGATCATTTACGGAAAGATTAAATAGACGAATCTTGCTAC
TGCTTGGTGTACGGTCTACA

Downstream 100 bases:

>100_bases
CCTGTCCGAAAAGGAGTCTCAGATCCCGAAACCGCACAATGTGCGGTTTTCTGTTGGATCGCGATCACATCGCGATCACA
TAAGGTCACATCACCCAAGT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 111; Mature: 110

Protein sequence:

>111_residues
MARLAVILEWSPMARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKINSKMIDEI
EKAERERAEREAMEWAAAEVVADEDMSKSDD

Sequences:

>Translated_111_residues
MARLAVILEWSPMARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKINSKMIDEI
EKAERERAEREAMEWAAAEVVADEDMSKSDD
>Mature_110_residues
ARLAVILEWSPMARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKINSKMIDEIE
KAERERAEREAMEWAAAEVVADEDMSKSDD

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=67, Percent_Identity=49.2537313432836, Blast_Score=63, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 12591; Mature: 12459

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARLAVILEWSPMARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPT
CCCEEEEEECCCCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHH
VMALREIAARKINSKMIDEIEKAERERAEREAMEWAAAEVVADEDMSKSDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
ARLAVILEWSPMARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPT
CCEEEEEECCCCCEECHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCHH
VMALREIAARKINSKMIDEIEKAERERAEREAMEWAAAEVVADEDMSKSDD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]