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The map label for this gene is psd

Identifier: 182681190

GI number: 182681190

Start: 751428

End: 752309

Strand: Reverse

Name: psd

Synonym: XfasM23_0634

Alternate gene names: 182681190

Gene position: 752309-751428 (Counterclockwise)

Preceding gene: 182681191

Following gene: 182681189

Centisome position: 29.67

GC content: 54.31

Gene sequence:

>882_bases
GTGAATTTCGTCACCACCCTGACCTATCTTCTGCCACATCGCATGCTGTCCTCGCTGGCACGCCACGTCGCCTATTGCCA
GCATCCACTGATCAAACAGTGGTTGATCGACACAGTCATCGCAAAATTCGACGTCAACCTGAGCGAAGCGGCGGAGCCGG
ATGCCCATGCCTACCCAAGCTTTAATGCCTTTTTCACCCGATCACTTAAAGCCGGCATACGCCCCCCTGATCCGAATCCG
GACACATTGCTCATGCCAGCCGACGGACGCATCAGCCAACTCGGGCCAATCCGCGAAGGGCGCATCTTTCAAGCCAAGGG
CCAGTCCTTCACTGCAACCGAGTTATTGGGCGATACCGCTGCTGCTTCTGCCTTCACCAACGGGCTGTTTGCCACTGTCT
ACCTATCGCCACGTGACTACCACCGCGTGCATATGCCTTGTACAGGTCAGCTGCTCAAAACAGTGCATGTACCAGGCCGC
TTATTCAGCGTCGGCCCAGATGCAGTACGCCAAATTCCACGACTGTTCGCACGTAACGAACGACTGGTATGCCATTTTGA
CACTACATTCGGGCCGATGGTCTTAGTGATGGTCGGAGCGCTGCTTGTCTCTGGTGTGGAAACGGTTTGGGGTGGTGTGG
AAATCCCCGCTTATGGCGATCGCATCACATACAAGGACTACCAAGGACGCAATATCGCCATAGAGCGCTTCGCAGAAATG
GCACGCTTCAACTATGGTTCAACAGTCATCGTGCTATTGCCACCAAATGTCCTCACCCTCGCCCCTCACCTCACAGCAGA
AAGCCCGGTCACACTCGGTCAAGCACTAGCACACCGTCTTTCTTTGAATCACTCAACACAGGCACCTACACAAGAAAAAT
AA

Upstream 100 bases:

>100_bases
TATTGGATCCGCAAGGCCACCATGTCGGCATGATCCACCCACCGTTCAACGCTGAGGAAATCCCCACGGACCTGCAAAAA
CTCACCAAGGAAATCACTCT

Downstream 100 bases:

>100_bases
TCATGTAAAAACCATGATTCAACAGCATTCCAACGCGTGCTCAACATTAAACAAAGCGGCACGAGGATAATTATCTTCAA
CGGAAAGCTATCGAATGGCG

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MNFVTTLTYLLPHRMLSSLARHVAYCQHPLIKQWLIDTVIAKFDVNLSEAAEPDAHAYPSFNAFFTRSLKAGIRPPDPNP
DTLLMPADGRISQLGPIREGRIFQAKGQSFTATELLGDTAAASAFTNGLFATVYLSPRDYHRVHMPCTGQLLKTVHVPGR
LFSVGPDAVRQIPRLFARNERLVCHFDTTFGPMVLVMVGALLVSGVETVWGGVEIPAYGDRITYKDYQGRNIAIERFAEM
ARFNYGSTVIVLLPPNVLTLAPHLTAESPVTLGQALAHRLSLNHSTQAPTQEK

Sequences:

>Translated_293_residues
MNFVTTLTYLLPHRMLSSLARHVAYCQHPLIKQWLIDTVIAKFDVNLSEAAEPDAHAYPSFNAFFTRSLKAGIRPPDPNP
DTLLMPADGRISQLGPIREGRIFQAKGQSFTATELLGDTAAASAFTNGLFATVYLSPRDYHRVHMPCTGQLLKTVHVPGR
LFSVGPDAVRQIPRLFARNERLVCHFDTTFGPMVLVMVGALLVSGVETVWGGVEIPAYGDRITYKDYQGRNIAIERFAEM
ARFNYGSTVIVLLPPNVLTLAPHLTAESPVTLGQALAHRLSLNHSTQAPTQEK
>Mature_293_residues
MNFVTTLTYLLPHRMLSSLARHVAYCQHPLIKQWLIDTVIAKFDVNLSEAAEPDAHAYPSFNAFFTRSLKAGIRPPDPNP
DTLLMPADGRISQLGPIREGRIFQAKGQSFTATELLGDTAAASAFTNGLFATVYLSPRDYHRVHMPCTGQLLKTVHVPGR
LFSVGPDAVRQIPRLFARNERLVCHFDTTFGPMVLVMVGALLVSGVETVWGGVEIPAYGDRITYKDYQGRNIAIERFAEM
ARFNYGSTVIVLLPPNVLTLAPHLTAESPVTLGQALAHRLSLNHSTQAPTQEK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=299, Percent_Identity=27.4247491638796, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1790604, Length=281, Percent_Identity=44.4839857651246, Blast_Score=237, Evalue=8e-64,
Organism=Caenorhabditis elegans, GI71980843, Length=259, Percent_Identity=30.1158301158301, Blast_Score=103, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71980840, Length=259, Percent_Identity=30.1158301158301, Blast_Score=103, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6321609, Length=258, Percent_Identity=28.6821705426357, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24649526, Length=308, Percent_Identity=28.8961038961039, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24649528, Length=308, Percent_Identity=28.8961038961039, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI24649524, Length=308, Percent_Identity=28.8961038961039, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_XYLF2 (B2I9I2)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001829350.1
- GeneID:   6202563
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0634
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- ProtClustDB:   PRK00044
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 32320; Mature: 32320

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFVTTLTYLLPHRMLSSLARHVAYCQHPLIKQWLIDTVIAKFDVNLSEAAEPDAHAYPS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
FNAFFTRSLKAGIRPPDPNPDTLLMPADGRISQLGPIREGRIFQAKGQSFTATELLGDTA
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCEEEECCCCEEHHHHHCCHH
AASAFTNGLFATVYLSPRDYHRVHMPCTGQLLKTVHVPGRLFSVGPDAVRQIPRLFARNE
HHHHHHCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTTFGPMVLVMVGALLVSGVETVWGGVEIPAYGDRITYKDYQGRNIAIERFAEM
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEECCCCCCCHHHHHHHHH
ARFNYGSTVIVLLPPNVLTLAPHLTAESPVTLGQALAHRLSLNHSTQAPTQEK
HHCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNFVTTLTYLLPHRMLSSLARHVAYCQHPLIKQWLIDTVIAKFDVNLSEAAEPDAHAYPS
CCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCC
FNAFFTRSLKAGIRPPDPNPDTLLMPADGRISQLGPIREGRIFQAKGQSFTATELLGDTA
HHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHCCCCCCCCEEEECCCCEEHHHHHCCHH
AASAFTNGLFATVYLSPRDYHRVHMPCTGQLLKTVHVPGRLFSVGPDAVRQIPRLFARNE
HHHHHHCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEECCHHHHHHHHHHHHCCC
RLVCHFDTTFGPMVLVMVGALLVSGVETVWGGVEIPAYGDRITYKDYQGRNIAIERFAEM
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCEEEECCCCCCCHHHHHHHHH
ARFNYGSTVIVLLPPNVLTLAPHLTAESPVTLGQALAHRLSLNHSTQAPTQEK
HHCCCCCEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA