| Definition | Xylella fastidiosa M23 chromosome, complete genome. |
|---|---|
| Accession | NC_010577 |
| Length | 2,535,690 |
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The map label for this gene is cysW [H]
Identifier: 182681178
GI number: 182681178
Start: 730956
End: 731915
Strand: Direct
Name: cysW [H]
Synonym: XfasM23_0620
Alternate gene names: 182681178
Gene position: 730956-731915 (Clockwise)
Preceding gene: 182681177
Following gene: 182681179
Centisome position: 28.83
GC content: 52.92
Gene sequence:
>960_bases ATGAGCAAGGATATGATGTCTGGGCCTTCTCTCTGTGTTCAGGGGCAGAGGGGTGTACAGCGTTGGCATCGGTTGTTGAC CGCATCTGCGACGACCGAGTCGTTGTGGGTACAGTGGTTGCTTATTCTGGGTGCGCTTGGCTTTTTATTGGCGTTTTTAC TGCTGCCACTGATGCTGGTGTTTTCCGAAGCATTGCGTGGTGGGGTGCAGGTTTTTCTACGGGCGGTCTCTGATCCTGAT GCGCTGGCTGCAATTCGTTTAACGATGTTAGTAACAATGATTGTGTTGCCGGTGAACATGGTTTTCGGTGTCGCCGTGGC GTGGGCGGTCAGTAAGTATCAGTTTCCTGGCAAGCGGCTGTTGGTTAGTTTGATTGATTTGCCGTTTTCGGTTTCACCGG TGGTTGCTGGTTTGGTGTTCGTGCTCATTTTTGGTCGGCAGGGGTGGGCTTGGCCGTTGATTGAGGATGGAGTTGACTTC TCCTTGCCTTTGTTTGGCGAGGTTATCGTGAAGTTGCCACGGGTCGTGTTCGCGTTGCCGGGGATCGTCTTGGCGACAAT ATTTGTCACTTTGCCATTTATTGCGCGCGAGCTGATGCCATTGATGGAGCAGCAAGGCAATGAGGAGGAGTTGGCTGCGT TGAGTCTGGGGGCCAGTGGTTGGCAGACTTTTTGGCGGGTGACGTTACCGAACATTCGTTGGGGGCTGTTGTATGGGGCG TTGTTGTGTGGTGCGCGTGCGATGGGTGAGTTTGGTGCAGTCTCTGTGGTATCTGGTCACATTCGTGGGCGAACCAACAC AATGCCGTTGCACGTGGAAATTCTGTATAGCGAATATGCTTACAGTGCTGCATTTGCCTGTGCTTCGTTGTTGGCGTTGA GTGCGTTGTTGACGTTGGCGTTAAAGGCTTTTCTGGAAAAGCGTCACGGTGAGTTGTTGGCTGTCGGGCGCCAGCATTGA
Upstream 100 bases:
>100_bases CTGCAATTGCGGCAGTAATGTTGTTGTTGTCATTCACGGTGTTGTTAATGGTCAACGCGATGCAGGCATGCTTATTGCGT GTTAAACATCGGGGGGGAAG
Downstream 100 bases:
>100_bases GGATGAATTGAGTATGGGGATCAGAATCCAGGAGCTGCGTAAACAGTTTGAGGATTTCACTGCATTGGCGGGTATCGATC TTGATATTCGTCAGGGTGAA
Product: sulfate ABC transporter inner membrane protein CysW
Products: ADP; phosphate; S2O32- [Cytoplasm]; SO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSKDMMSGPSLCVQGQRGVQRWHRLLTASATTESLWVQWLLILGALGFLLAFLLLPLMLVFSEALRGGVQVFLRAVSDPD ALAAIRLTMLVTMIVLPVNMVFGVAVAWAVSKYQFPGKRLLVSLIDLPFSVSPVVAGLVFVLIFGRQGWAWPLIEDGVDF SLPLFGEVIVKLPRVVFALPGIVLATIFVTLPFIARELMPLMEQQGNEEELAALSLGASGWQTFWRVTLPNIRWGLLYGA LLCGARAMGEFGAVSVVSGHIRGRTNTMPLHVEILYSEYAYSAAFACASLLALSALLTLALKAFLEKRHGELLAVGRQH
Sequences:
>Translated_319_residues MSKDMMSGPSLCVQGQRGVQRWHRLLTASATTESLWVQWLLILGALGFLLAFLLLPLMLVFSEALRGGVQVFLRAVSDPD ALAAIRLTMLVTMIVLPVNMVFGVAVAWAVSKYQFPGKRLLVSLIDLPFSVSPVVAGLVFVLIFGRQGWAWPLIEDGVDF SLPLFGEVIVKLPRVVFALPGIVLATIFVTLPFIARELMPLMEQQGNEEELAALSLGASGWQTFWRVTLPNIRWGLLYGA LLCGARAMGEFGAVSVVSGHIRGRTNTMPLHVEILYSEYAYSAAFACASLLALSALLTLALKAFLEKRHGELLAVGRQH >Mature_318_residues SKDMMSGPSLCVQGQRGVQRWHRLLTASATTESLWVQWLLILGALGFLLAFLLLPLMLVFSEALRGGVQVFLRAVSDPDA LAAIRLTMLVTMIVLPVNMVFGVAVAWAVSKYQFPGKRLLVSLIDLPFSVSPVVAGLVFVLIFGRQGWAWPLIEDGVDFS LPLFGEVIVKLPRVVFALPGIVLATIFVTLPFIARELMPLMEQQGNEEELAALSLGASGWQTFWRVTLPNIRWGLLYGAL LCGARAMGEFGAVSVVSGHIRGRTNTMPLHVEILYSEYAYSAAFACASLLALSALLTLALKAFLEKRHGELLAVGRQH
Specific function: Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4208
COG function: function code P; ABC-type sulfate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI87082099, Length=288, Percent_Identity=47.5694444444444, Blast_Score=255, Evalue=3e-69, Organism=Escherichia coli, GI1788764, Length=241, Percent_Identity=34.0248962655602, Blast_Score=138, Evalue=6e-34, Organism=Escherichia coli, GI1786980, Length=196, Percent_Identity=31.6326530612245, Blast_Score=77, Evalue=1e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011866 - InterPro: IPR005667 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 34834; Mature: 34703
Theoretical pI: Translated: 8.84; Mature: 8.84
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKDMMSGPSLCVQGQRGVQRWHRLLTASATTESLWVQWLLILGALGFLLAFLLLPLMLV CCCCCCCCCCCEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSEALRGGVQVFLRAVSDPDALAAIRLTMLVTMIVLPVNMVFGVAVAWAVSKYQFPGKRL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LVSLIDLPFSVSPVVAGLVFVLIFGRQGWAWPLIEDGVDFSLPLFGEVIVKLPRVVFALP HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH GIVLATIFVTLPFIARELMPLMEQQGNEEELAALSLGASGWQTFWRVTLPNIRWGLLYGA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHHH LLCGARAMGEFGAVSVVSGHIRGRTNTMPLHVEILYSEYAYSAAFACASLLALSALLTLA HHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LKAFLEKRHGELLAVGRQH HHHHHHHHCCCEEECCCCC >Mature Secondary Structure SKDMMSGPSLCVQGQRGVQRWHRLLTASATTESLWVQWLLILGALGFLLAFLLLPLMLV CCCCCCCCCCEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FSEALRGGVQVFLRAVSDPDALAAIRLTMLVTMIVLPVNMVFGVAVAWAVSKYQFPGKRL HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH LVSLIDLPFSVSPVVAGLVFVLIFGRQGWAWPLIEDGVDFSLPLFGEVIVKLPRVVFALP HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHH GIVLATIFVTLPFIARELMPLMEQQGNEEELAALSLGASGWQTFWRVTLPNIRWGLLYGA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHEECCCCHHHHHHHH LLCGARAMGEFGAVSVVSGHIRGRTNTMPLHVEILYSEYAYSAAFACASLLALSALLTLA HHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH LKAFLEKRHGELLAVGRQH HHHHHHHHCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; S2O32- [Periplasm]; H2O; SO42- [Periplasm]; ATP [C]
Specific reaction: ATP + S2O32- [Periplasm] + H2O = ADP + phosphate + S2O32- [Cytoplasm] SO42- [Periplasm] + H2O + ATP = SO42- [Cytoplasm] + phosphate + ADP [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]