Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is 182681121
Identifier: 182681121
GI number: 182681121
Start: 669978
End: 671504
Strand: Reverse
Name: 182681121
Synonym: XfasM23_0563
Alternate gene names: NA
Gene position: 671504-669978 (Counterclockwise)
Preceding gene: 182681122
Following gene: 182681120
Centisome position: 26.48
GC content: 55.27
Gene sequence:
>1527_bases ATGGCCATGACCCCTCGCATCGCTCTTTTGTCGCTACTACTTTCTGGTAGTGTTCCTTTGGCCTACGCAACGGCAACGCC CCCCAAGCCCGACAAGGAAACCACCACACCTGCTACCACCCTCACAGCACTACCAGCCAACACACAGATACGGCAAAGCA TCCGCATCGGTAACCGCACCCTCGGTAACCGCACCCTAAGCTACAAAGCCATCATTGGTGCTTTACCGGTACAAGACGAC AAAGGCAAGACGATCGGCGAGGTGATGTTCACCGCCTACATCATGAAAGGCAACAACCGCCCGGTCACCTTCGCTTTAAA CGGCGGTCCCGGAGCCTCCTCGGTTTATCTCAATATGGGCGCGATCGGCCCCAAGGTGGTTCACTTCGGCACCCAGGGCA CCAGCCCATCCGACCCCGCGATACTGCACGACAACCCCGGCACTTGGCTGGACTTTACAGATCTTGTGTTCATCGACCCA ATCGGCACCGGCTTCAGCCGTGCCCGCATTGAAGGCGAGGAAGCTAAAAAACAATTCTTCAACCCCAAAGCCGACGTCGA CTACTTATCACGCACGATCTATGACTGGCTGGTCGCCAATGGCCGTCTCCTCTCCCGCAAATATTTGGTGGGTGAAAGCT ACGGCGGCTTCCGCGCTCCACGTATTGCACACACCTTACAAACCCAGATGGGTATTGCACTCAATGGACTGGTGCTGGTC TCGCCCTACCTCAACCCGACCCTGGACGACAATAGCGATGTTTCACCGTTAGCCTGGATAATGACCCTGCCTTCTATCGC CGCCGCACACCTGGAACGCCAACATCAGTTAAGCGAAGCAAAGATGCGCGAAGTGATTGAGTACACGCGTGGCGACTATG CCAGCACACTGATGAAAGGCCGCTCTGATCCTGCGGCCACCGAAACGATGCTACAGCAAGTCATACACCTGACCGGATTA GATCCGACTTATGTACGCCGTGCTGGCGGACGTCTGGAAACGCAGGCCTACCTACGTGAAGTATTCCGTGATACAGGCGA ACTTGGGAGCCGCTATGACATTAACGTCACTGCATTGGACCCGTTTCCCTACGATTCCGAGCAACGCACCAACGACCCGT TACTAGACAGCATCATCGCCCCAACTACTACAGCCATGGTCGACTTCGTCACCCGAACCGTTGGGTGGAAAGTACACGAA CGCTATCAAGCCCTGAACTACGATGTAAATCGACAATGGGACTGGAACGAAGAGTTGCGTAAAGGCTCAGTCACACAATT ACGCCAATCGGTGGCCATTGACCCAAAACTACGCGTGTTGATCGCACATGGCTGGAACGACCTTTCCTGCCCCTTCATGG CATCGGTGTTGACCATCGACCAGATTCCCAAAATGGGCAGCGATCCAACCCGGATACAAGTGCGCGAATATCCTGGCGGC CACATGTTTTACAACCGCCCCGACAGCCAGTCATCATTCCGCCAAGACGTACAAGCGATGTACGAACATCCCCAGGACAC CCCCTGA
Upstream 100 bases:
>100_bases CAGATCCAATCAACCCCAACATCAAGACATGGCCTCCAGCAACTTCTGATACCCCCACCGCTCACCGCGACTGCTCTCAT TTCTCACCAAATCTATTCAC
Downstream 100 bases:
>100_bases ATCAGTCGCCTGAAATATATCTAGCTTGATATTGATCAATCACTTGCGACATAAAAGCAATACTCATTCCAGAGTATTGC TGACTTGACCGCTCAAGGGA
Product: peptidase S10 serine carboxypeptidase
Products: NA
Alternate protein names: Serine Carboxypeptidase Family Protein; Carboxypeptidase-Related Protein; Serine Carboxypeptidase; Carboxypeptidase C; Serine-Type Carboxypeptidase Family Protein; Carboxypeptidase; S10 Family Peptidase; S10 Family Carboxypeptidase; Carboxypeptidase-Like Protein; Peptidase S; Serine Carboxypeptidase Superfamily
Number of amino acids: Translated: 508; Mature: 507
Protein sequence:
>508_residues MAMTPRIALLSLLLSGSVPLAYATATPPKPDKETTTPATTLTALPANTQIRQSIRIGNRTLGNRTLSYKAIIGALPVQDD KGKTIGEVMFTAYIMKGNNRPVTFALNGGPGASSVYLNMGAIGPKVVHFGTQGTSPSDPAILHDNPGTWLDFTDLVFIDP IGTGFSRARIEGEEAKKQFFNPKADVDYLSRTIYDWLVANGRLLSRKYLVGESYGGFRAPRIAHTLQTQMGIALNGLVLV SPYLNPTLDDNSDVSPLAWIMTLPSIAAAHLERQHQLSEAKMREVIEYTRGDYASTLMKGRSDPAATETMLQQVIHLTGL DPTYVRRAGGRLETQAYLREVFRDTGELGSRYDINVTALDPFPYDSEQRTNDPLLDSIIAPTTTAMVDFVTRTVGWKVHE RYQALNYDVNRQWDWNEELRKGSVTQLRQSVAIDPKLRVLIAHGWNDLSCPFMASVLTIDQIPKMGSDPTRIQVREYPGG HMFYNRPDSQSSFRQDVQAMYEHPQDTP
Sequences:
>Translated_508_residues MAMTPRIALLSLLLSGSVPLAYATATPPKPDKETTTPATTLTALPANTQIRQSIRIGNRTLGNRTLSYKAIIGALPVQDD KGKTIGEVMFTAYIMKGNNRPVTFALNGGPGASSVYLNMGAIGPKVVHFGTQGTSPSDPAILHDNPGTWLDFTDLVFIDP IGTGFSRARIEGEEAKKQFFNPKADVDYLSRTIYDWLVANGRLLSRKYLVGESYGGFRAPRIAHTLQTQMGIALNGLVLV SPYLNPTLDDNSDVSPLAWIMTLPSIAAAHLERQHQLSEAKMREVIEYTRGDYASTLMKGRSDPAATETMLQQVIHLTGL DPTYVRRAGGRLETQAYLREVFRDTGELGSRYDINVTALDPFPYDSEQRTNDPLLDSIIAPTTTAMVDFVTRTVGWKVHE RYQALNYDVNRQWDWNEELRKGSVTQLRQSVAIDPKLRVLIAHGWNDLSCPFMASVLTIDQIPKMGSDPTRIQVREYPGG HMFYNRPDSQSSFRQDVQAMYEHPQDTP >Mature_507_residues AMTPRIALLSLLLSGSVPLAYATATPPKPDKETTTPATTLTALPANTQIRQSIRIGNRTLGNRTLSYKAIIGALPVQDDK GKTIGEVMFTAYIMKGNNRPVTFALNGGPGASSVYLNMGAIGPKVVHFGTQGTSPSDPAILHDNPGTWLDFTDLVFIDPI GTGFSRARIEGEEAKKQFFNPKADVDYLSRTIYDWLVANGRLLSRKYLVGESYGGFRAPRIAHTLQTQMGIALNGLVLVS PYLNPTLDDNSDVSPLAWIMTLPSIAAAHLERQHQLSEAKMREVIEYTRGDYASTLMKGRSDPAATETMLQQVIHLTGLD PTYVRRAGGRLETQAYLREVFRDTGELGSRYDINVTALDPFPYDSEQRTNDPLLDSIIAPTTTAMVDFVTRTVGWKVHER YQALNYDVNRQWDWNEELRKGSVTQLRQSVAIDPKLRVLIAHGWNDLSCPFMASVLTIDQIPKMGSDPTRIQVREYPGGH MFYNRPDSQSSFRQDVQAMYEHPQDTP
Specific function: Unknown
COG id: COG2939
COG function: function code E; Carboxypeptidase C (cathepsin A)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56410; Mature: 56279
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS00131 CARBOXYPEPT_SER_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMTPRIALLSLLLSGSVPLAYATATPPKPDKETTTPATTLTALPANTQIRQSIRIGNRT CCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCEE LGNRTLSYKAIIGALPVQDDKGKTIGEVMFTAYIMKGNNRPVTFALNGGPGASSVYLNMG CCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHEEECCCCEEEEEECCCCCCCEEEEECC AIGPKVVHFGTQGTSPSDPAILHDNPGTWLDFTDLVFIDPIGTGFSRARIEGEEAKKQFF CCCCEEEEECCCCCCCCCCEEEECCCCCEEECCCEEEECCCCCCHHHHCCCCHHHHHHHC NPKADVDYLSRTIYDWLVANGRLLSRKYLVGESYGGFRAPRIAHTLQTQMGIALNGLVLV CCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEECCEEEE SPYLNPTLDDNSDVSPLAWIMTLPSIAAAHLERQHQLSEAKMREVIEYTRGDYASTLMKG ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC RSDPAATETMLQQVIHLTGLDPTYVRRAGGRLETQAYLREVFRDTGELGSRYDINVTALD CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC PFPYDSEQRTNDPLLDSIIAPTTTAMVDFVTRTVGWKVHERYQALNYDVNRQWDWNEELR CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHH KGSVTQLRQSVAIDPKLRVLIAHGWNDLSCPFMASVLTIDQIPKMGSDPTRIQVREYPGG CCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC HMFYNRPDSQSSFRQDVQAMYEHPQDTP CEEECCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AMTPRIALLSLLLSGSVPLAYATATPPKPDKETTTPATTLTALPANTQIRQSIRIGNRT CCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCEE LGNRTLSYKAIIGALPVQDDKGKTIGEVMFTAYIMKGNNRPVTFALNGGPGASSVYLNMG CCCCEEEEEHHHCCCCCCCCCCCHHHHHHHHHHEEECCCCEEEEEECCCCCCCEEEEECC AIGPKVVHFGTQGTSPSDPAILHDNPGTWLDFTDLVFIDPIGTGFSRARIEGEEAKKQFF CCCCEEEEECCCCCCCCCCEEEECCCCCEEECCCEEEECCCCCCHHHHCCCCHHHHHHHC NPKADVDYLSRTIYDWLVANGRLLSRKYLVGESYGGFRAPRIAHTLQTQMGIALNGLVLV CCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCEECCEEEE SPYLNPTLDDNSDVSPLAWIMTLPSIAAAHLERQHQLSEAKMREVIEYTRGDYASTLMKG ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHC RSDPAATETMLQQVIHLTGLDPTYVRRAGGRLETQAYLREVFRDTGELGSRYDINVTALD CCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEC PFPYDSEQRTNDPLLDSIIAPTTTAMVDFVTRTVGWKVHERYQALNYDVNRQWDWNEELR CCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHH KGSVTQLRQSVAIDPKLRVLIAHGWNDLSCPFMASVLTIDQIPKMGSDPTRIQVREYPGG CCCHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC HMFYNRPDSQSSFRQDVQAMYEHPQDTP CEEECCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA