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The map label for this gene is yggB [C]

Identifier: 182681105

GI number: 182681105

Start: 649017

End: 649934

Strand: Reverse

Name: yggB [C]

Synonym: XfasM23_0547

Alternate gene names: 182681105

Gene position: 649934-649017 (Counterclockwise)

Preceding gene: 182681106

Following gene: 182681102

Centisome position: 25.63

GC content: 50.33

Gene sequence:

>918_bases
ATGGACTGGACTAAATTACTATCAAACATCGTATCGCCTGCAACAGTGACGACGTTCCACGGCAGATTCAACTGGACACG
GATCGACTGGATCCACATCCTCATGAATCTGACCGCCGCCGCCGCCATCGCCATCCTTGGTGTATGGTTGAGCAAACGCC
TGAGCAACGGGCTGCATCGCATCCTGATCCGCGCGCACGTTGAAATCACACTAGCCAACTTCCTGCGGAATATCGCATAC
GCGCTGCTTTTGATCGTTGTCTCTGTCAGCGTCCTGCAACGCCTTGGTGTTCCAGCAACATCCTTAGCCGCAGTGGTCGG
TGCAACCGGATTAGCAGTTGGCCTCGCACTGAAAGATTCACTCTCCAACATCGCAGCAGGAGTGATGCTCATCGTATTAG
GCCCAGTCCGTAGTGGTGACCACGTTGTCATCGCCGGCCAAGAAGGCATCATTGATGAAATCCGGATATTCCAAACCCGG
CTACGTACCTTCGATCAGCGCATCATCACCTTACCAAACAGCACAATCACTACAGTACCTATCATCAATTACAGCACCCT
GCCAACCCGTCGGGTTGAAATCACTGTCGGTGTCAGCTATCAAGACAACTTAAAGCAGGCACAGGAACTACTGGTAAAAA
TTGCCCGCGAAAATCCAAAAATATTGGATGACCCTGCACCCTTGGTGTATGTCAACAACCTTGGAGAAAGTAGCGTAGAC
CTTCTGCTATTGGCCTACACCCAGAACGACAACTTCAACCCTGCCAAAAGCGAGATCCTTGAACAAATTCACAATCAACT
ACCTGAAAATGGGTTGAACATCCCCTATCCACAACGTGACCTACATCTCTACCACCACGACACCAACAACGGAAAAATCG
CCTCACTGCTATTACCTAGCGTGACCGACAAAAGCTAA

Upstream 100 bases:

>100_bases
CGAATGGCTGATGCAAGAAGGCATAGAATCCCTGTCACTGAACCCAGATACCGTCGTCGATACTTGGCTACGCTTGGCAA
AACTAAAAACGGTGCACTAA

Downstream 100 bases:

>100_bases
GGCCAACACAAAGGGCCACCGCTGGCCTGCCAACATTGAAAGTACACCCACGCCCAGGGGGTGGGTGTCACTCACGTCCC
AACCAACCCCACAATGCCAC

Product: mechanosensitive ion channel MscS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MDWTKLLSNIVSPATVTTFHGRFNWTRIDWIHILMNLTAAAAIAILGVWLSKRLSNGLHRILIRAHVEITLANFLRNIAY
ALLLIVVSVSVLQRLGVPATSLAAVVGATGLAVGLALKDSLSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQTR
LRTFDQRIITLPNSTITTVPIINYSTLPTRRVEITVGVSYQDNLKQAQELLVKIARENPKILDDPAPLVYVNNLGESSVD
LLLLAYTQNDNFNPAKSEILEQIHNQLPENGLNIPYPQRDLHLYHHDTNNGKIASLLLPSVTDKS

Sequences:

>Translated_305_residues
MDWTKLLSNIVSPATVTTFHGRFNWTRIDWIHILMNLTAAAAIAILGVWLSKRLSNGLHRILIRAHVEITLANFLRNIAY
ALLLIVVSVSVLQRLGVPATSLAAVVGATGLAVGLALKDSLSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQTR
LRTFDQRIITLPNSTITTVPIINYSTLPTRRVEITVGVSYQDNLKQAQELLVKIARENPKILDDPAPLVYVNNLGESSVD
LLLLAYTQNDNFNPAKSEILEQIHNQLPENGLNIPYPQRDLHLYHHDTNNGKIASLLLPSVTDKS
>Mature_305_residues
MDWTKLLSNIVSPATVTTFHGRFNWTRIDWIHILMNLTAAAAIAILGVWLSKRLSNGLHRILIRAHVEITLANFLRNIAY
ALLLIVVSVSVLQRLGVPATSLAAVVGATGLAVGLALKDSLSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQTR
LRTFDQRIITLPNSTITTVPIINYSTLPTRRVEITVGVSYQDNLKQAQELLVKIARENPKILDDPAPLVYVNNLGESSVD
LLLLAYTQNDNFNPAKSEILEQIHNQLPENGLNIPYPQRDLHLYHHDTNNGKIASLLLPSVTDKS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=249, Percent_Identity=36.144578313253, Blast_Score=180, Evalue=8e-47,
Organism=Escherichia coli, GI1786670, Length=255, Percent_Identity=28.6274509803922, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1787591, Length=237, Percent_Identity=26.5822784810127, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI2367355, Length=217, Percent_Identity=25.8064516129032, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 33555; Mature: 33555

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWTKLLSNIVSPATVTTFHGRFNWTRIDWIHILMNLTAAAAIAILGVWLSKRLSNGLHR
CCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIRAHVEITLANFLRNIAYALLLIVVSVSVLQRLGVPATSLAAVVGATGLAVGLALKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQTRLRTFDQRIITLPNSTITTVP
HHHHHHHHHEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEE
IINYSTLPTRRVEITVGVSYQDNLKQAQELLVKIARENPKILDDPAPLVYVNNLGESSVD
EEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCCCCEE
LLLLAYTQNDNFNPAKSEILEQIHNQLPENGLNIPYPQRDLHLYHHDTNNGKIASLLLPS
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
VTDKS
CCCCC
>Mature Secondary Structure
MDWTKLLSNIVSPATVTTFHGRFNWTRIDWIHILMNLTAAAAIAILGVWLSKRLSNGLHR
CCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILIRAHVEITLANFLRNIAYALLLIVVSVSVLQRLGVPATSLAAVVGATGLAVGLALKDS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
LSNIAAGVMLIVLGPVRSGDHVVIAGQEGIIDEIRIFQTRLRTFDQRIITLPNSTITTVP
HHHHHHHHHEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHEEECCCCCEEEEE
IINYSTLPTRRVEITVGVSYQDNLKQAQELLVKIARENPKILDDPAPLVYVNNLGESSVD
EEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEECCCCCCEE
LLLLAYTQNDNFNPAKSEILEQIHNQLPENGLNIPYPQRDLHLYHHDTNNGKIASLLLPS
EEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCC
VTDKS
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]