Definition | Xylella fastidiosa M23 chromosome, complete genome. |
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Accession | NC_010577 |
Length | 2,535,690 |
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The map label for this gene is ypjD [H]
Identifier: 182680698
GI number: 182680698
Start: 177249
End: 178091
Strand: Reverse
Name: ypjD [H]
Synonym: XfasM23_0127
Alternate gene names: 182680698
Gene position: 178091-177249 (Counterclockwise)
Preceding gene: 182680700
Following gene: 182680695
Centisome position: 7.02
GC content: 46.98
Gene sequence:
>843_bases TTGTTGTTATTGGTTATTATTGTTTTTTTTACATATTTTTTAGCGGTATGGATGCTGTTTTGTGAGTTGTTATTTAATGA TATTTCGCGCAGAGGTGAGTGGCGTATTCCGGGGCTGGTGGGTCTATTAGCTCACGGGGGTTATCATTTTTTGGTGGTAT TAGGCAATGCTGGTGCTGTGGACATGCATTTTTTCTCTGTTCTTTCTATGACGTTTTTTGTGATGTCTGGCTTGACAATT TTATTTAGTACGCATGTGGGGACGGTGGGTGTGGTGGTGTTCCCTGTGGCGGGGTTATTGCTTGCTGTTTATCACGGTTA CGGTCACTCACCCAGCCCGGAACTGGGTTGGCGTGTAGAGCTGCATGCTTGTCTAGCGTTACTAGGCTATGCGACGTTAG GCATAGCAGCACTATTGGCGATGATGTTGTGGTTTCGGGAACGTGCGTTGCGGCGACGCAATGTTCACCACTGGCATGGT GCTCTGCCGCCGCTGACTGAGTTAGAGAAGCTGCTTTTCCGCACGATCACGTTTGGTTTCATCCTGTTGACCTTCACTGT ATTCACTGGTTTTTTGTTTGTGAGAGACTTTCTGGAACAGAAGTTGTTGCATAAGAGTGTGCTAAGTGTTCTGTCCTGGG TGATATTTGGAGGGTTGTTAATTGGACGCTGGCAGTATGGCTGGCGAGGCATCAAGGCGGTGCACTGGACATTAACAGCG ATGATGTTTTTAGTACTGGCGTTTTTTGGGAGCAAACTGATGATTGAGCTCATGCTACGTCACCAAAGCAGTTCATTATC ACCCGTCAGGCACGCGTCATACGGAGAGCAAGGATTGAGATAA
Upstream 100 bases:
>100_bases ATCACAGGAAGCATATCTTCATTCTGACAATGAGATGCAAACTTTTTAATTTTTGCTTTATATATTTCCATTAGAATATT TACATTATGTGAGGTGATAA
Downstream 100 bases:
>100_bases GCACGGTGTACTTGAGAAGCTAGCACCTCTGTCATCGGGCTCGGTAGTGGATAAGGATGATCACCTACGACACCCAACAA TGATCATCGCTACCTGGTGG
Product: cytochrome c assembly protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 280; Mature: 280
Protein sequence:
>280_residues MLLLVIIVFFTYFLAVWMLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTI LFSTHVGTVGVVVFPVAGLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHG ALPPLTELEKLLFRTITFGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTA MMFLVLAFFGSKLMIELMLRHQSSSLSPVRHASYGEQGLR
Sequences:
>Translated_280_residues MLLLVIIVFFTYFLAVWMLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTI LFSTHVGTVGVVVFPVAGLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHG ALPPLTELEKLLFRTITFGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTA MMFLVLAFFGSKLMIELMLRHQSSSLSPVRHASYGEQGLR >Mature_280_residues MLLLVIIVFFTYFLAVWMLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAVDMHFFSVLSMTFFVMSGLTI LFSTHVGTVGVVVFPVAGLLLAVYHGYGHSPSPELGWRVELHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHG ALPPLTELEKLLFRTITFGFILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTA MMFLVLAFFGSKLMIELMLRHQSSSLSPVRHASYGEQGLR
Specific function: Unknown
COG id: COG4137
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI145693174, Length=241, Percent_Identity=27.8008298755187, Blast_Score=73, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002541 [H]
Pfam domain/function: PF01578 Cytochrom_C_asm [H]
EC number: NA
Molecular weight: Translated: 31731; Mature: 31731
Theoretical pI: Translated: 10.21; Mature: 10.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLLVIIVFFTYFLAVWMLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEECCCCCH DMHFFSVLSMTFFVMSGLTILFSTHVGTVGVVVFPVAGLLLAVYHGYGHSPSPELGWRVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH LHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHGALPPLTELEKLLFRTITFGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHH ILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMFLVLAFFGSKLMIELMLRHQSSSLSPVRHASYGEQGLR HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC >Mature Secondary Structure MLLLVIIVFFTYFLAVWMLFCELLFNDISRRGEWRIPGLVGLLAHGGYHFLVVLGNAGAV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCEEEEEEECCCCCH DMHFFSVLSMTFFVMSGLTILFSTHVGTVGVVVFPVAGLLLAVYHGYGHSPSPELGWRVE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH LHACLALLGYATLGIAALLAMMLWFRERALRRRNVHHWHGALPPLTELEKLLFRTITFGF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHH ILLTFTVFTGFLFVRDFLEQKLLHKSVLSVLSWVIFGGLLIGRWQYGWRGIKAVHWTLTA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MMFLVLAFFGSKLMIELMLRHQSSSLSPVRHASYGEQGLR HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]