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The map label for this gene is radC

Identifier: 182680681

GI number: 182680681

Start: 149447

End: 150175

Strand: Reverse

Name: radC

Synonym: XfasM23_0110

Alternate gene names: 182680681

Gene position: 150175-149447 (Counterclockwise)

Preceding gene: 182680685

Following gene: 182680680

Centisome position: 5.92

GC content: 55.97

Gene sequence:

>729_bases
ATGATCCATTCCAGTCTGATATCAGAGAAGCATGAGACTAGGCATCCTACACAGATGCACATCAACAACTGGCCTACGCA
TGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGCAGAACTGCTCGCAATCTTCCTAGGCT
CCGGCCTACGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTCATGGTCCACTACGAGAACTGCTGGAC
CGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCATGCAAACTCACCGCAGCACTGGAATTAAG
CACCCGCCACCTGGCAGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAATCAGCGCCGGACGCTATTTCGCACAGC
GCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGCACCGCGCGATCAGCTTTGAAGAATTG
TTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGCGCATTAACTCTGAACGCAGCGGCAGT
GATCGTCGGCCATAATCACCCATCCGGTAATCGCGAACCATCACCAGCCGACCAAATGATCACCCAACGCTTGAAAAACG
CCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGTGACGGTGCGCCGGTCTCATTCGCCGAACATGGC
TGGCTATAA

Upstream 100 bases:

>100_bases
GACACACAACAGCAAACGCTGTCCGTTCAATGACCGTGGCTGATGAGATCCAGTCACCTCAGTTGATTCCTACAGTTAAT
TAGGACGACTAGATTAGCCG

Downstream 100 bases:

>100_bases
ACCTGGAAGACACCTATTCAGCGTATGGGAGGGCTGCCAAGCAGCCTACAAACTGAATGCTAACGCGCTCCTCATACAAA
CGGTCAGATAAAATTACGCT

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MIHSSLISEKHETRHPTQMHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLD
RPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEEL
FHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHG
WL

Sequences:

>Translated_242_residues
MIHSSLISEKHETRHPTQMHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLD
RPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEEL
FHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHG
WL
>Mature_242_residues
MIHSSLISEKHETRHPTQMHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLD
RPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEEL
FHGTINGAEVHPREVVRRALTLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHG
WL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=41.3145539906103, Blast_Score=186, Evalue=1e-48,
Organism=Escherichia coli, GI1788997, Length=153, Percent_Identity=44.4444444444444, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI2367100, Length=102, Percent_Identity=58.8235294117647, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=56.8627450980392, Blast_Score=120, Evalue=8e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26704; Mature: 26704

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHSSLISEKHETRHPTQMHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHD
CCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHH
AVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGAS
HHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
IHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRRAL
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHH
TLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHG
HHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
WL
CC
>Mature Secondary Structure
MIHSSLISEKHETRHPTQMHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHD
CCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHH
AVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARACKLTAALELSTRHLAAALQRGAS
HHHHHHHHHHCCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
IHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRRAL
CCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHH
TLNAAAVIVGHNHPSGNREPSPADQMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHG
HHCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
WL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12533478 [H]