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The map label for this gene is rimM

Identifier: 182680645

GI number: 182680645

Start: 104705

End: 105217

Strand: Direct

Name: rimM

Synonym: XfasM23_0074

Alternate gene names: 182680645

Gene position: 104705-105217 (Clockwise)

Preceding gene: 182680644

Following gene: 182680646

Centisome position: 4.13

GC content: 51.85

Gene sequence:

>513_bases
ATGAAAGATAATGAGCGCCGTATCCTGCTAGGAAGGGTTGTAGGTGGTTTCGGGTTGCGTGGTGAAATCAAGATAGAGTC
TTGGACTGAGCCACGGGATGCGATCTTCCGTTACCAGCCGTGGTTATTACGTTCTCCTACGGGTACCGAGTCCATGTTGA
ATGGTGCCCGTGGCTACGAGACTGGCAAGCGTTTGATTGCAACCTTTCCTGGCATCAATGATCGTAATGGAGTCGAAGCG
ATCTGTGGTACGGAAATCTATGTGCCACGCAGCGCCTTGCCTCCACCTCACCCCGACGAGTATTACTGGGTCGATTTGGA
AGGGCTGCAAGTACACACCCTTGAAGGTGTGGTTCTCGGTAGCGTTTCCCATCTGTTTTCCAACGGCGCCAATGATGTGA
TAGTCATCCATGGCGAGCGCGAGCGCTTGATCCCGTTTGTACAGCCTGATTACGTGAAGTCGGTTGATTTTGAGGCTGAG
CGTATTGTTGTCGATTGGGATCCTGAGTTCTGA

Upstream 100 bases:

>100_bases
GACAAGGTGCGTAGCTTGCTTAAGGAAGTCAGCAAAACCCAGGCGACTGCGGCCTAATGAATGGGATTGGGTCTCCTGAT
CCAACCTGGATACCGCACTG

Downstream 100 bases:

>100_bases
TCGTGGATGCGTGATGGCGTCCATGATCAGGCCAGTTCTGTCCCGTCTTGCCGGATACTGTTTCACCACAGCATCCCTCA
TCCAATCCGGTTTCAGATAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYETGKRLIATFPGINDRNGVEA
ICGTEIYVPRSALPPPHPDEYYWVDLEGLQVHTLEGVVLGSVSHLFSNGANDVIVIHGERERLIPFVQPDYVKSVDFEAE
RIVVDWDPEF

Sequences:

>Translated_170_residues
MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYETGKRLIATFPGINDRNGVEA
ICGTEIYVPRSALPPPHPDEYYWVDLEGLQVHTLEGVVLGSVSHLFSNGANDVIVIHGERERLIPFVQPDYVKSVDFEAE
RIVVDWDPEF
>Mature_170_residues
MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYETGKRLIATFPGINDRNGVEA
ICGTEIYVPRSALPPPHPDEYYWVDLEGLQVHTLEGVVLGSVSHLFSNGANDVIVIHGERERLIPFVQPDYVKSVDFEAE
RIVVDWDPEF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=36.4705882352941, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_XYLF2 (B2I6A7)

Other databases:

- EMBL:   CP001011
- RefSeq:   YP_001828805.1
- ProteinModelPortal:   B2I6A7
- SMR:   B2I6A7
- GeneID:   6202566
- GenomeReviews:   CP001011_GR
- KEGG:   xfn:XfasM23_0074
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19237; Mature: 19237

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYE
CCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHEECCCEEEECCCCCHHHHCCCCCCC
TGKRLIATFPGINDRNGVEAICGTEIYVPRSALPPPHPDEYYWVDLEGLQVHTLEGVVLG
CCCEEEEECCCCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEEECCCEEEEECCEEEH
SVSHLFSNGANDVIVIHGERERLIPFVQPDYVKSVDFEAERIVVDWDPEF
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MKDNERRILLGRVVGGFGLRGEIKIESWTEPRDAIFRYQPWLLRSPTGTESMLNGARGYE
CCCCCCEEEEEEEECCCCCEEEEEECCCCCHHHHHEECCCEEEECCCCCHHHHCCCCCCC
TGKRLIATFPGINDRNGVEAICGTEIYVPRSALPPPHPDEYYWVDLEGLQVHTLEGVVLG
CCCEEEEECCCCCCCCCCEEECCCEEEECCCCCCCCCCCCEEEEEECCCEEEEECCEEEH
SVSHLFSNGANDVIVIHGERERLIPFVQPDYVKSVDFEAERIVVDWDPEF
HHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA