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The map label for this gene is ygaD [H]

Identifier: 182680626

GI number: 182680626

Start: 84645

End: 85133

Strand: Reverse

Name: ygaD [H]

Synonym: XfasM23_0055

Alternate gene names: 182680626

Gene position: 85133-84645 (Counterclockwise)

Preceding gene: 182680627

Following gene: 182680625

Centisome position: 3.36

GC content: 53.17

Gene sequence:

>489_bases
ATGCCAACCGACCAGCAGATCCGTAACCTATCTGAAACCTTGGGTAAGCAGTTATGCATGACACGCGAGCGGTTGGTCAC
TGCAGAGAGCTGCACTGGTGGCTGGATCGCTAAAGCGATTACCGATGTTCCTGGATCATCTGCTTGGTTCGAATGTGGCA
TCGTCGCCTACAGTTACGAAGCCAAGCAGGCGTTGCTTGGAGTGCGTCCGGAGACGCTTGAAATACACGGTGCGGTCAGT
CGTGAAACTGTGGTGGAAATGGTCTCCGGCGCATTGGTACAGTCCGGTGCCAGCATCGCAATAGCAGTAACAGGGATTGC
TGGACCTGAGGGTGGCAGTACAGGCAAACCAATTGGCAGTGTCTGGATTAGCTGGAAACGACGTGGTGGTTACGCCAACC
CACAATTTTTTAAATTCGATGGTGATCGCGATGCCGTGCGTCGAGAAACTGTGCTGACTGCATTACTGGGCCTCAGTACG
TTGCTGTAA

Upstream 100 bases:

>100_bases
TACCTGCATCATGACCATTAAAACATGCACCGATTTTATAGAAGACAATCAAGTTCAGTTCAACGAAAACAACTACCCTC
CTCTTTAATGCGTACCGAAA

Downstream 100 bases:

>100_bases
CGGCATAGGTTACAAACCCTCTTTCTCCGTACCCAAGCGCACATTCCATAGCAACGCCGTAACCTTACCGAACAAGATCC
ATAGAAAAATACCCGGCACC

Product: CinA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MPTDQQIRNLSETLGKQLCMTRERLVTAESCTGGWIAKAITDVPGSSAWFECGIVAYSYEAKQALLGVRPETLEIHGAVS
RETVVEMVSGALVQSGASIAIAVTGIAGPEGGSTGKPIGSVWISWKRRGGYANPQFFKFDGDRDAVRRETVLTALLGLST
LL

Sequences:

>Translated_162_residues
MPTDQQIRNLSETLGKQLCMTRERLVTAESCTGGWIAKAITDVPGSSAWFECGIVAYSYEAKQALLGVRPETLEIHGAVS
RETVVEMVSGALVQSGASIAIAVTGIAGPEGGSTGKPIGSVWISWKRRGGYANPQFFKFDGDRDAVRRETVLTALLGLST
LL
>Mature_161_residues
PTDQQIRNLSETLGKQLCMTRERLVTAESCTGGWIAKAITDVPGSSAWFECGIVAYSYEAKQALLGVRPETLEIHGAVSR
ETVVEMVSGALVQSGASIAIAVTGIAGPEGGSTGKPIGSVWISWKRRGGYANPQFFKFDGDRDAVRRETVLTALLGLSTL
L

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=51.9230769230769, Blast_Score=153, Evalue=5e-39,
Organism=Escherichia coli, GI1787818, Length=123, Percent_Identity=39.8373983739837, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17260; Mature: 17129

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDQQIRNLSETLGKQLCMTRERLVTAESCTGGWIAKAITDVPGSSAWFECGIVAYSYE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECEEEEEHH
AKQALLGVRPETLEIHGAVSRETVVEMVSGALVQSGASIAIAVTGIAGPEGGSTGKPIGS
HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHH
VWISWKRRGGYANPQFFKFDGDRDAVRRETVLTALLGLSTLL
HEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PTDQQIRNLSETLGKQLCMTRERLVTAESCTGGWIAKAITDVPGSSAWFECGIVAYSYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEECEEEEEHH
AKQALLGVRPETLEIHGAVSRETVVEMVSGALVQSGASIAIAVTGIAGPEGGSTGKPIGS
HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHH
VWISWKRRGGYANPQFFKFDGDRDAVRRETVLTALLGLSTLL
HEEEEECCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]