| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is fldC
Identifier: 170757677
GI number: 170757677
Start: 3556372
End: 3557496
Strand: Reverse
Name: fldC
Synonym: CLD_1234
Alternate gene names: 170757677
Gene position: 3557496-3556372 (Counterclockwise)
Preceding gene: 170757344
Following gene: 170757106
Centisome position: 89.88
GC content: 30.13
Gene sequence:
>1125_bases ATGTCAAATTCAGATAAATTCTTTAATGACTTTAAGGATATTATAGACCATCCTAAAAAATATATAATGAAGCATATGGA AAAAACTGGACAAAAGGCTATAGGATGTATGCCATTATATACTCCTGAAGAACTTGTATTAGCTGCTGGAATGTTTCCAG TAGGTGTATGGGGAAGCAATACAGAACTTTCAAAAGCTAAAACATATTTCCCAGCATTTATTTGCTCAATATTACAAACA ACATTGGAAAATGCATTAAATGGGGAATATGATATGTTGTCCGGTATGATGATTCCAAATTATTGTGATTCATTAAAATG CATGGGACAAAATTTTAAATTAACAGTTGAAAATATTGACTTTATACCAGTAACAGTTCCACAAAACAGAAAAATGGAAG CTGGAAAAGAATTTTTAAAAAGTCAGTACAAGATGAATATTGAACAGCTAGAAAAGATTTCTGGTAATAAAATAACAGAT GAATCTTTAGAAAAGGCTATAGAAGTATATGATGAACACAGAAAAATAATGAATGACTTTTCAATGTTAGCATCAAAATA TCCAGATGTAATAACACCAACCAAACGTAATTATGTTATGAAGTCTGCTTATTATATGGATAAGAAAGAACATACTGAAA AAGTTAGACAATTGATGGATGAAATTAAAACTATAGATTCAAAACCATTTGAAGGAAAGAGAGTTATAACTACAGGTATA ATAGCAGATTCAGAAGATTTACTTAAAATATTAGAAGAAAATAATATAGCTATAGTTGGTGATGATATAGCACATGAATC CAGACAATATAGAACTTTAACACCAGAAGCAGCCACACCAATGGATAGGTTAGCTGAGCAATTTGCTAATAGAGAATGTA GTACTTTATATGACCCTGAAAAGAAAAGGGGTAAATATATAGTAGAAATGGCTAAAGAGAGAAAAGCAGATGGGATTATA TTTTTCATGACAAAATTCTGTGACCCAGAGGAATATGATTATCCACAAATGAAAAAGGATTTTGAAGAAGCAGGTATTCC ACATGTACTAATAGAAACTGATATGCAAATGAAAAATTATGAACAAGCTAGAACTGCAATTCAAGCTTTTTCAGAAACAC TTTAA
Upstream 100 bases:
>100_bases GGGGATCAAGCAGACCCAAGAAATTTCTCAGAAGCACAATATGATACTAGAATTCAAGGACTTAATGAAGTAATGGTTGC TAAAAAGGAGGCTGAATAAG
Downstream 100 bases:
>100_bases TAAAAGTTTTCAAAATTTACTGTAAACTTTATTAATTGAAACATTGATTTCTCTTCTCTCTTTATAAAATAATACTTATT TTTCAAAAAAGTTATCTTTG
Product: R-phenyllactate dehydratase, C subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSNSDKFFNDFKDIIDHPKKYIMKHMEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQT TLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITD ESLEKAIEVYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGII FFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL
Sequences:
>Translated_374_residues MSNSDKFFNDFKDIIDHPKKYIMKHMEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQT TLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITD ESLEKAIEVYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGII FFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL >Mature_373_residues SNSDKFFNDFKDIIDHPKKYIMKHMEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSNTELSKAKTYFPAFICSILQTT LENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENIDFIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDE SLEKAIEVYDEHRKIMNDFSMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGII ADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPEKKRGKYIVEMAKERKADGIIF FMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNYEQARTAIQAFSETL
Specific function: Catalyzes the reversible dehydration of 2- hydroxyglutaryl-CoA to glutaconyl-CoA. This is a key step in the fermentation of glutamate [H]
COG id: COG1775
COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082427, Length=367, Percent_Identity=22.8882833787466, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010327 [H]
Pfam domain/function: PF06050 HGD-D [H]
EC number: NA
Molecular weight: Translated: 43161; Mature: 43030
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 5.9 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 5.6 %Met (Mature Protein) 7.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSDKFFNDFKDIIDHPKKYIMKHMEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSN CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCC TELSKAKTYFPAFICSILQTTLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENID CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCC FIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDESLEKAIEVYDEHRKIMNDF EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH SMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI HHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPE ECCHHHHHHHHHCCCEEEEECHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCH KKRGKYIVEMAKERKADGIIFFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNY HHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHH EQARTAIQAFSETL HHHHHHHHHHHHCC >Mature Secondary Structure SNSDKFFNDFKDIIDHPKKYIMKHMEKTGQKAIGCMPLYTPEELVLAAGMFPVGVWGSN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCC TELSKAKTYFPAFICSILQTTLENALNGEYDMLSGMMIPNYCDSLKCMGQNFKLTVENID CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHCCCCCEEEEECCC FIPVTVPQNRKMEAGKEFLKSQYKMNIEQLEKISGNKITDESLEKAIEVYDEHRKIMNDF EEEEECCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH SMLASKYPDVITPTKRNYVMKSAYYMDKKEHTEKVRQLMDEIKTIDSKPFEGKRVITTGI HHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE IADSEDLLKILEENNIAIVGDDIAHESRQYRTLTPEAATPMDRLAEQFANRECSTLYDPE ECCHHHHHHHHHCCCEEEEECHHHHCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCH KKRGKYIVEMAKERKADGIIFFMTKFCDPEEYDYPQMKKDFEEAGIPHVLIETDMQMKNY HHHHHHHHHHHHHCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCHHHHH EQARTAIQAFSETL HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2659350; 3691501; 11106419 [H]