| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is uvrA
Identifier: 170757626
GI number: 170757626
Start: 3694761
End: 3697583
Strand: Reverse
Name: uvrA
Synonym: CLD_1122
Alternate gene names: 170757626
Gene position: 3697583-3694761 (Counterclockwise)
Preceding gene: 170755543
Following gene: 170754919
Centisome position: 93.41
GC content: 30.75
Gene sequence:
>2823_bases ATGAAGGATAAAATTATTATTAAAGGCGCTAAGGTTAATAATTTAAAAAATATAAATCTTCAGTTGCCGAGAGATAAGTA TATAGTATTTACAGGCCTATCTGGTTCTGGTAAATCCTCATTAGCTTTTGATACTTTATATGCAGAGGGACAGAGAAGAT ATGTAGAATCTTTATCTGCCTATGCTAGACAGTTTTTAGGACAAATGGATAAACCAGAAGTAGATTATATAGAAGGGTTA TCACCGGCCATATCTATTGATCAAAAAACCACTAATAGAAATCCACGTTCAACTGTTGGAACTGTGACAGAAATATATGA TTATTTAAGACTGCTATATGCAAAAATAGGAAAACCTCATTGCCCTAAATGTGGAAAAGAAATAACTCAACAAACAGTAG ATCAAATGGTAGATAAAATAATGACTATGGAGGAAAGGACTAAAATACAAGTGTTATCTCCCATTATAAATGGAAGAAAA GGTGAGCACATTAAGACTATAGAAAACATAATAAAATCAGGGTATGTAAGAGCCAGAATAGATGGAAATATAGTAGATTT AGAAGAGGAAGAAATAAAGTTAGAAAAAAATAAAAAACATACCATAGAGGCTGTAGTAGATAGATTAGTAGTTAAAGAAG GCATAGAAAGTAGACTTGCAGATTCTATGGAAACTGCATTAAAGTTATCAGAAGGAATAGTAATAATAAATGTTGTGGGA CAAGAGGATATGCTTTTTAGTGAAAAATTTGCTTGTGTAGATTGTAATATAAGTATAGGAGAAATAGCTCCTAGAATGTT TTCTTTTAACTCCCCTTATGGAAAGTGTGATAAATGTGATGGATTAGGTACCTTAATGGAAATAGATGAGGACTTAGTTA TACCGAATAAAAGTAAGAGTATAGTAGAGGGAGCAATAATTCCATTAGGCAGTGGTAGTTTAAAGGAAGATTCATGGACT TTTAGTATATTAAAAGCTTTGTCAAAGGAATATAAATTTGATTTAAATACTCCTATAGAAAAATTAGATCCTAAAATAGT AAAGATCATTTTATATGGACTAGATGGAAAAAGAATAAAAGTAAATTATAAAAAAGAAAATAGAATCATGGAATTAAATC ATGCTTATGAAGGTGTTATAAATAATCTTAGAAGAAGATATATAGAAACTAATTCTGATTATATAAAAAGAGATATTGAA AGATATATGAGTGATAATCCTTGTCCAAAATGCAAAGGTGCAAGACTTCATGATGAGGCTTTATCTGTTACAGTAGCAGA TAAAAATATATTTGAGTTTTGTAATATGTCCATAAAAAAAGAACTTGATTTTATAGAATCTTTAGAGTTATCTAAAAAAG AGGAAATAATAAGCAATCAAATACTAAAAGAGATTCGCAGTAGACTAAAATTTTTAATAGATGTAGGTTTAGATTATCTT ACATTATCTAGAAATGCATCAACTTTATCTGGAGGAGAGTCTCAAAGAATAAGATTGGCTACACAAATAGGCTCTAGTTT AGTAGGGGTTTTATATATATTAGATGAACCTAGTATAGGACTTCATCAAAGAGATAATGATAGACTTATAAAAACATTAA AAAATTTAAGGGACTTAGGGAATACTTTAGTAGTTGTAGAACATGACGAAGATACCATAAGAGAAGCAGACTATATTGTT GATATAGGTCCAGGTGCTGGTGAACATGGTGGAGAAGTAGTAGCAGCAGGAACCTTAGAAGATATAATGAATACCGAAAA GTCTATAACAGGACAATATATAAAGGGAGTTAGAACTATATCAGTACCTAAAGAAAGACGAAAATGTGAAGGTAATTATA TATCCATAAAGGGAGCTAGAGAAAATAATTTGAAAAACGTAAGCGCTAAATTCCCTATAGGATTATTTACTTGTGTAACA GGAGTTTCAGGTTCAGGCAAAAGTACCCTAGTTAATGAAATATTATATAAAGGTATTCATAAAAAGCTAAATAATTCAAA GGATAATCCAGGTAAACATAAGGAGATTACTGGCATAGAAAATGTAGATAAGGTTATAAATATAGATCAGAGCCCTATAG GTAGAACCCCAAGATCCAATCCTGCCACCTATACGGGAGTATTTGATATTATAAGAGAAGTTTTTTCAAATACTCAAGAG GCTAAGATGCGAGGATATAAACCAGGGAGATTTAGTTTCAATGTCAAAGGTGGAAGATGTGAGGCTTGCACTGGAGACGG AATTATAAAAATTGAAATGCAATTTTTATCTGATGTATATGTTCCTTGTGAAGTATGTAAAGGAAAAAGATATAATAGAG AAACTTTAGAAGTAAAATATAAAGGGAAGAATATATCAGATGTATTAAATATGACTGTAGAAGAAGCTCTAGACTTTTTT GAAAATATTCCACGTATAAAAAGTAAGCTTCAAACTCTTATGGATGTGGGCTTAAGCTATATAAGATTGGGTCAATCCTC TACACAACTTTCAGGAGGGGAAGCTCAAAGAATAAAATTAGCTTATGAGTTATCTAAAAGAAGTACAGGAAAAACTCTCT ATATATTAGATGAGCCTACTACTGGACTTCATATGGAGGATGTAAATAAGTTAATAAGTATACTACAAAGATTGACAAAT TCAGGTAATACTGTAGTGGTTATAGAGCATAATTTAGATGTTATAAAAAATGCGGATTATTTAATAGATTTAGGACCAGA AGGCGGAGAAAAGGGAGGAACTATAATAGCAGAGGGAACCCCAGAAAAAATTTCAAGAGCTAGTAACTCATATACAGGAC AATATTTAAAAAAGATGTTATAA
Upstream 100 bases:
>100_bases ACAAAATTTACAGTTTGAAAAAGCGGCTCATTTGAGAGATGTAATATACAAATTAAAAAAAGATAAAGAAACAGAACTTT AAGGAGTGTAATAACAAATA
Downstream 100 bases:
>100_bases TTTATTTGGGACTAGCATATAAACATATAGGTGCTAGTCCTTTAAATACAAATATTTTAGCATAATATACCAACAGGGAA GGTAAAGAAGGTGATAGTAT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 940; Mature: 940
Protein sequence:
>940_residues MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPEVDYIEGL SPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPHCPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRK GEHIKTIENIIKSGYVRARIDGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKSIVEGAIIPLGSGSLKEDSWT FSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIKVNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIE RYMSDNPCPKCKGARLHDEALSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLGNTLVVVEHDEDTIREADYIV DIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTISVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVT GVSGSGKSTLVNEILYKGIHKKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNISDVLNMTVEEALDFF ENIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKLAYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTN SGNTVVVIEHNLDVIKNADYLIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML
Sequences:
>Translated_940_residues MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPEVDYIEGL SPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPHCPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRK GEHIKTIENIIKSGYVRARIDGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKSIVEGAIIPLGSGSLKEDSWT FSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIKVNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIE RYMSDNPCPKCKGARLHDEALSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLGNTLVVVEHDEDTIREADYIV DIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTISVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVT GVSGSGKSTLVNEILYKGIHKKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNISDVLNMTVEEALDFF ENIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKLAYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTN SGNTVVVIEHNLDVIKNADYLIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML >Mature_940_residues MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPEVDYIEGL SPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPHCPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRK GEHIKTIENIIKSGYVRARIDGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKSIVEGAIIPLGSGSLKEDSWT FSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIKVNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIE RYMSDNPCPKCKGARLHDEALSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLGNTLVVVEHDEDTIREADYIV DIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTISVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVT GVSGSGKSTLVNEILYKGIHKKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNISDVLNMTVEEALDFF ENIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKLAYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTN SGNTVVVIEHNLDVIKNADYLIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=944, Percent_Identity=57.8389830508475, Blast_Score=1117, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105138; Mature: 105138
Theoretical pI: Translated: 8.23; Mature: 8.23
Prosite motif: PS00063 ALDOKETO_REDUCTASE_3 ; PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSA CCCCEEEECCCCCCEEECEEECCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHH YARQFLGQMDKPEVDYIEGLSPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPH HHHHHHCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC CPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRKGEHIKTIENIIKSGYVRARI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEE DGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG CCCEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKS CCCHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCH IVEGAIIPLGSGSLKEDSWTFSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIK HHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCHHEEEEEEECCCCCEEE VNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIERYMSDNPCPKCKGARLHDEA EEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL EEEEEECHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLG EECCCCCCCCCCCCCCEEHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC NTLVVVEHDEDTIREADYIVDIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTI CEEEEEECCCHHHHCCCEEEECCCCCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCEEE SVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVTGVSGSGKSTLVNEILYKGIH CCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH KKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE HHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY HHHCCCCCCCEEEEECCCEEEEECCCCEEEEEEHHHHCCCCCHHHHCCCCCCCCEEEEEE KGKNISDVLNMTVEEALDFFENIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCEEEE AYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTNSGNTVVVIEHNLDVIKNADY EEEHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCE LIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML EEEECCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHHHHC >Mature Secondary Structure MKDKIIIKGAKVNNLKNINLQLPRDKYIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSA CCCCEEEECCCCCCEEECEEECCCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHH YARQFLGQMDKPEVDYIEGLSPAISIDQKTTNRNPRSTVGTVTEIYDYLRLLYAKIGKPH HHHHHHCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC CPKCGKEITQQTVDQMVDKIMTMEERTKIQVLSPIINGRKGEHIKTIENIIKSGYVRARI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEE DGNIVDLEEEEIKLEKNKKHTIEAVVDRLVVKEGIESRLADSMETALKLSEGIVIINVVG CCCEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC QEDMLFSEKFACVDCNISIGEIAPRMFSFNSPYGKCDKCDGLGTLMEIDEDLVIPNKSKS CCCHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCH IVEGAIIPLGSGSLKEDSWTFSILKALSKEYKFDLNTPIEKLDPKIVKIILYGLDGKRIK HHCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCHHEEEEEEECCCCCEEE VNYKKENRIMELNHAYEGVINNLRRRYIETNSDYIKRDIERYMSDNPCPKCKGARLHDEA EEEECCCCEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC LSVTVADKNIFEFCNMSIKKELDFIESLELSKKEEIISNQILKEIRSRLKFLIDVGLDYL EEEEEECHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE TLSRNASTLSGGESQRIRLATQIGSSLVGVLYILDEPSIGLHQRDNDRLIKTLKNLRDLG EECCCCCCCCCCCCCCEEHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC NTLVVVEHDEDTIREADYIVDIGPGAGEHGGEVVAAGTLEDIMNTEKSITGQYIKGVRTI CEEEEEECCCHHHHCCCEEEECCCCCCCCCCCEEECCCHHHHHCCHHHHHHHHHCCCEEE SVPKERRKCEGNYISIKGARENNLKNVSAKFPIGLFTCVTGVSGSGKSTLVNEILYKGIH CCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHH KKLNNSKDNPGKHKEITGIENVDKVINIDQSPIGRTPRSNPATYTGVFDIIREVFSNTQE HHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH AKMRGYKPGRFSFNVKGGRCEACTGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY HHHCCCCCCCEEEEECCCEEEEECCCCEEEEEEHHHHCCCCCHHHHCCCCCCCCEEEEEE KGKNISDVLNMTVEEALDFFENIPRIKSKLQTLMDVGLSYIRLGQSSTQLSGGEAQRIKL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHCCCCCCCCCCCCCCEEEE AYELSKRSTGKTLYILDEPTTGLHMEDVNKLISILQRLTNSGNTVVVIEHNLDVIKNADY EEEHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEECCCCE LIDLGPEGGEKGGTIIAEGTPEKISRASNSYTGQYLKKML EEEECCCCCCCCCEEEECCCHHHHHHCCCCHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12552129 [H]