| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is fldB
Identifier: 170757344
GI number: 170757344
Start: 3557498
End: 3558721
Strand: Reverse
Name: fldB
Synonym: CLD_1233
Alternate gene names: 170757344
Gene position: 3558721-3557498 (Counterclockwise)
Preceding gene: 170755617
Following gene: 170757677
Centisome position: 89.91
GC content: 34.07
Gene sequence:
>1224_bases ATGAGTGATAGAAATAAGGAAGTAAAAGAAAAAAAAGCAAAGCATTATCTTAGAGAGATTACTGCAAAGCATTATAAAGA GGCTCTCGAAGCAAAAGAAAGGGGAGAAAAAGTTGGTTGGTGTGCATCCAACTTCCCACAAGAAATAGCTACAACATTGG GGGTAAAAGTTGTTTATCCAGAAAATCATGCAGCAGCTGTAGCAGCTAGAGGAAATGGACAAAACATGTGTGAACATGCT GAGGCCATGGGATTTTCTAATGATGTATGTGGTTATGCAAGAGTAAATTTAGCTGTTATGGACATAGGTCATAGCGAAGA CCAACCAATACCTATGCCAGATTTTGTACTTTGCTGTAATAACATTTGTAATCAAATGATTAAATGGTATGAACATATAG CAAAAACTTTAGATATACCAATGATTCTTATAGATATACCATATAATACTGAAGACGCTATTTCACAGGATAGAATTAAA TATATAAGAGCTCAGTTTGATAATGCAATAAAACAGTTAGAAGAAATAACAGGTAAAAAATGGGATGAAGATAAATTTGA AGAAGTTATGAAGATATCTCAAGAGAGTGCAAAACAATGGTTAAGAGCAGCATCCTATGCAAAATATAAACCTTCACCAT TTAGTGGATTCGATTTATTTAATCATATGGCTGTAGCAGTTTGTGCAAGGGGTACACAAGAAGCTGCAGATGCATTTAAG ATGTTAGCAGATGAATATGAGGAAAATGTAAAGACTGGAAAGTCCACTTATAGAGGAGAAGAAAAACAACGTATATTATT TGAAGGAATTGCCTGTTGGCCATATTTGAGACATAAATTAACTAAACTTAGTGAATATGGCATGAATGTAACTGCGACTG TGTATGCTGAAGCTTTTGGTGTTATATATGAAAATACAGATGAATTAATGGCTGCTTACAATAAAGTTCCTAATTCAATT AGTTTTGAAAATGCGTTAAAGATGAGATTAAATGCTGTTACAAGCACTAATACAGAAGGTGCTGTTATTCATATAAACAG AAGCTGTAAACTGTGGAGTGGATTTTTATATGAGCTAGGAAGAAGATTAGAAAAGGAGACCGGAATTCCTGTAGTATCAT TTGATGGGGATCAAGCAGACCCAAGAAATTTCTCAGAAGCACAATATGATACTAGAATTCAAGGACTTAATGAAGTAATG GTTGCTAAAAAGGAGGCTGAATAA
Upstream 100 bases:
>100_bases GGAAAAGACATTTATATATCTGAAAATTCCCAATTGAATGGAGCATTGGGAGCAAGTCTATACGCTTATGAAAGTTTTCA AAAAGAAAGGAGCTAAAAAC
Downstream 100 bases:
>100_bases GATGTCAAATTCAGATAAATTCTTTAATGACTTTAAGGATATTATAGACCATCCTAAAAAATATATAATGAAGCATATGG AAAAAACTGGACAAAAGGCT
Product: R-phenyllactate dehydratase, B subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MSDRNKEVKEKKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAARGNGQNMCEHA EAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWYEHIAKTLDIPMILIDIPYNTEDAISQDRIK YIRAQFDNAIKQLEEITGKKWDEDKFEEVMKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFK MLADEYEENVKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDELMAAYNKVPNSI SFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGIPVVSFDGDQADPRNFSEAQYDTRIQGLNEVM VAKKEAE
Sequences:
>Translated_407_residues MSDRNKEVKEKKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAARGNGQNMCEHA EAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWYEHIAKTLDIPMILIDIPYNTEDAISQDRIK YIRAQFDNAIKQLEEITGKKWDEDKFEEVMKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFK MLADEYEENVKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDELMAAYNKVPNSI SFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGIPVVSFDGDQADPRNFSEAQYDTRIQGLNEVM VAKKEAE >Mature_406_residues SDRNKEVKEKKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYPENHAAAVAARGNGQNMCEHAE AMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCNNICNQMIKWYEHIAKTLDIPMILIDIPYNTEDAISQDRIKY IRAQFDNAIKQLEEITGKKWDEDKFEEVMKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFKM LADEYEENVKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFGVIYENTDELMAAYNKVPNSIS FENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELGRRLEKETGIPVVSFDGDQADPRNFSEAQYDTRIQGLNEVMV AKKEAE
Specific function: Catalyzes the reversible dehydration of 2- hydroxyglutaryl-CoA to glutaconyl-CoA. This is a key step in the fermentation of glutamate. It is activated by hgdC [H]
COG id: COG1775
COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010327 [H]
Pfam domain/function: PF06050 HGD-D [H]
EC number: NA
Molecular weight: Translated: 46179; Mature: 46048
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRNKEVKEKKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHCEEEEEC ENHAAAVAARGNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCN CCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCCCCCCCHHHHHHHH NICNQMIKWYEHIAKTLDIPMILIDIPYNTEDAISQDRIKYIRAQFDNAIKQLEEITGKK HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC WDEDKFEEVMKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFK CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH MLADEYEENVKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFG HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH VIYENTDELMAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELG HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH RRLEKETGIPVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKEAE HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDRNKEVKEKKAKHYLREITAKHYKEALEAKERGEKVGWCASNFPQEIATTLGVKVVYP CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHCEEEEEC ENHAAAVAARGNGQNMCEHAEAMGFSNDVCGYARVNLAVMDIGHSEDQPIPMPDFVLCCN CCCCEEEEECCCCCHHHHHHHHCCCCCCCCCHHEEEEEEEECCCCCCCCCCCHHHHHHHH NICNQMIKWYEHIAKTLDIPMILIDIPYNTEDAISQDRIKYIRAQFDNAIKQLEEITGKK HHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC WDEDKFEEVMKISQESAKQWLRAASYAKYKPSPFSGFDLFNHMAVAVCARGTQEAADAFK CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH MLADEYEENVKTGKSTYRGEEKQRILFEGIACWPYLRHKLTKLSEYGMNVTATVYAEAFG HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHH VIYENTDELMAAYNKVPNSISFENALKMRLNAVTSTNTEGAVIHINRSCKLWSGFLYELG HHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHH RRLEKETGIPVVSFDGDQADPRNFSEAQYDTRIQGLNEVMVAKKEAE HHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2659350; 3691501; 8365476; 11106419 [H]