| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is guaB
Identifier: 170757052
GI number: 170757052
Start: 3566236
End: 3567690
Strand: Reverse
Name: guaB
Synonym: CLD_1227
Alternate gene names: 170757052
Gene position: 3567690-3566236 (Counterclockwise)
Preceding gene: 170756380
Following gene: 170756813
Centisome position: 90.13
GC content: 33.06
Gene sequence:
>1455_bases ATGGCAAAAATAATAAAACAAGCATATACTTTTGATGACGTTCTTTTAGTTCCAAATAAATCAGAAGTTTTACCAAAGGA AGTTAATTTAGGCACGAATTTAACTAAAAAAATAAAATTAAACATACCTCTTATGAGTGCCGGAATGGATACAGTTACGG AGTCTAAAATGGCTATTGCTATGGCTAGAGAAGGCGGTATGGGAATAATACATAAAAATATGACTATAGCTGAGCAAGCT AGTGAAGTTGATAAGGTAAAAAGACAAGAAAATGGAGTAATAGCAGATCCTTTTTATCTTGCACCAAATAATACTATACA AGATGCATTAAATCTTATGAGTAGATACAGAATTTCTGGAGTACCTATAACTAAAGAAGGAAAATTAGTTGGAATAATAA CTAATAGGGATATATTATTTGAAAATAATTATGAAAAGAAGATAGAAGAAGTTATGACTAAAGAGAATCTTATAACAGCA CCAGAAAATACTACTATAGGGGAAGCAAAAGATATATTAAAATCACATAAAATAGAAAAATTACCTTTAGTCGATAAAGA TAATAATTTACGTGGACTTATTACTATAAAAGATATAGAAAAAGTTAAAAAATTCCCTAATAGCGCTAAAGATTATAGGG GAAGACTTTTATGTGGTGCAGCGGTTGGAGTTACAAAGGATATGATGGAAAGAGTAGACGCCTTAGTAAAAGCACAAGTA GATATAATTACAGTAGATACCGCCCATGGACATTCTAAAGGAGTTATAGAAGGTGTAAAGAAAATAAAAGAAAAATATCC AGATATTCAGATTATTGCAGGAAATGTTGCAACAGCTGAAGCAACTAGAGATTTAATAAATGCAGGAGCAGATTGTATAA AGATCGGAATAGGACCTGGTTCTATATGTACAACTAGAGTAGTTGCAGGTGTAGGAGTGCCTCAACTTACAGCAGTTATG GATTGTGTTGAAGAAGCAAATAAATACGGTATATCAGTAGTAGCTGATGGTGGAATTAAATATTCAGGAGATATAGTTAA AGCACTAGCTGCTGGAGCTAAAGCTGTTATGATGGGTTCAATGTTTGCAGGATGTGCAGAAGCACCAGGAGAAACAGAAA TATATCAAGGAAGAAGTTACAAAGTATATAGAGGGATGGGATCATTAGCTGCTATGGCTTGTGGTAGTAAGGATAGATAC TTCCAAGAAGATAGCAAAAAATTAGTTCCTGAAGGAGTAGAAGGAAGAGTACCATTTAAAGGACCAGTAATGGAAACTAT ATATCAAATGTTAGGTGGCATTCGTTCAGGTATGGGATATTTAGGTTCTGCTACGTTGAATGATTTATATGAAAAGGCCA CATTTGTAATTCAAACATCTTCAGGGATAAGAGAAAGTCATCCTCATGATATTTCAATAACAAAAGAAGCGCCAAATTAT AGCGTTAATCAATAA
Upstream 100 bases:
>100_bases TTATTAATAATGCTACAATAAAGGCCTATTAATTTTCGCTTATAGTTTCAGTGGTAATTAATGTGTTTTTTTTTATAATT TTATAGGAAGGATGATTTAA
Downstream 100 bases:
>100_bases AAGGAGGCACATATGAATAAAGAATTAGTATTAGTAGTTGACTTTGGAGGTCAATATAATCAGTTAATAGCAAGACGTGT AAGGGAAAATAGAGTGTATT
Product: inosine 5'-monophosphate dehydrogenase
Products: NA
Alternate protein names: IMP dehydrogenase; IMPD; IMPDH; Superoxide-inducible protein 12; SOI12 [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MAKIIKQAYTFDDVLLVPNKSEVLPKEVNLGTNLTKKIKLNIPLMSAGMDTVTESKMAIAMAREGGMGIIHKNMTIAEQA SEVDKVKRQENGVIADPFYLAPNNTIQDALNLMSRYRISGVPITKEGKLVGIITNRDILFENNYEKKIEEVMTKENLITA PENTTIGEAKDILKSHKIEKLPLVDKDNNLRGLITIKDIEKVKKFPNSAKDYRGRLLCGAAVGVTKDMMERVDALVKAQV DIITVDTAHGHSKGVIEGVKKIKEKYPDIQIIAGNVATAEATRDLINAGADCIKIGIGPGSICTTRVVAGVGVPQLTAVM DCVEEANKYGISVVADGGIKYSGDIVKALAAGAKAVMMGSMFAGCAEAPGETEIYQGRSYKVYRGMGSLAAMACGSKDRY FQEDSKKLVPEGVEGRVPFKGPVMETIYQMLGGIRSGMGYLGSATLNDLYEKATFVIQTSSGIRESHPHDISITKEAPNY SVNQ
Sequences:
>Translated_484_residues MAKIIKQAYTFDDVLLVPNKSEVLPKEVNLGTNLTKKIKLNIPLMSAGMDTVTESKMAIAMAREGGMGIIHKNMTIAEQA SEVDKVKRQENGVIADPFYLAPNNTIQDALNLMSRYRISGVPITKEGKLVGIITNRDILFENNYEKKIEEVMTKENLITA PENTTIGEAKDILKSHKIEKLPLVDKDNNLRGLITIKDIEKVKKFPNSAKDYRGRLLCGAAVGVTKDMMERVDALVKAQV DIITVDTAHGHSKGVIEGVKKIKEKYPDIQIIAGNVATAEATRDLINAGADCIKIGIGPGSICTTRVVAGVGVPQLTAVM DCVEEANKYGISVVADGGIKYSGDIVKALAAGAKAVMMGSMFAGCAEAPGETEIYQGRSYKVYRGMGSLAAMACGSKDRY FQEDSKKLVPEGVEGRVPFKGPVMETIYQMLGGIRSGMGYLGSATLNDLYEKATFVIQTSSGIRESHPHDISITKEAPNY SVNQ >Mature_483_residues AKIIKQAYTFDDVLLVPNKSEVLPKEVNLGTNLTKKIKLNIPLMSAGMDTVTESKMAIAMAREGGMGIIHKNMTIAEQAS EVDKVKRQENGVIADPFYLAPNNTIQDALNLMSRYRISGVPITKEGKLVGIITNRDILFENNYEKKIEEVMTKENLITAP ENTTIGEAKDILKSHKIEKLPLVDKDNNLRGLITIKDIEKVKKFPNSAKDYRGRLLCGAAVGVTKDMMERVDALVKAQVD IITVDTAHGHSKGVIEGVKKIKEKYPDIQIIAGNVATAEATRDLINAGADCIKIGIGPGSICTTRVVAGVGVPQLTAVMD CVEEANKYGISVVADGGIKYSGDIVKALAAGAKAVMMGSMFAGCAEAPGETEIYQGRSYKVYRGMGSLAAMACGSKDRYF QEDSKKLVPEGVEGRVPFKGPVMETIYQMLGGIRSGMGYLGSATLNDLYEKATFVIQTSSGIRESHPHDISITKEAPNYS VNQ
Specific function: GMP biosynthesis from IMP; first step. [C]
COG id: COG0516
COG function: function code F; IMP dehydrogenase/GMP reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Homo sapiens, GI66933016, Length=480, Percent_Identity=42.5, Blast_Score=369, Evalue=1e-102, Organism=Homo sapiens, GI217035146, Length=480, Percent_Identity=42.9166666666667, Blast_Score=367, Evalue=1e-101, Organism=Homo sapiens, GI34328930, Length=480, Percent_Identity=42.9166666666667, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI34328928, Length=480, Percent_Identity=42.9166666666667, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI156616279, Length=480, Percent_Identity=42.9166666666667, Blast_Score=365, Evalue=1e-101, Organism=Homo sapiens, GI217035152, Length=477, Percent_Identity=42.9769392033543, Blast_Score=362, Evalue=1e-100, Organism=Homo sapiens, GI217035148, Length=480, Percent_Identity=42.0833333333333, Blast_Score=354, Evalue=9e-98, Organism=Homo sapiens, GI217035150, Length=480, Percent_Identity=40, Blast_Score=329, Evalue=3e-90, Organism=Homo sapiens, GI50541954, Length=239, Percent_Identity=42.2594142259414, Blast_Score=183, Evalue=3e-46, Organism=Homo sapiens, GI50541952, Length=239, Percent_Identity=42.2594142259414, Blast_Score=183, Evalue=3e-46, Organism=Homo sapiens, GI50541948, Length=239, Percent_Identity=42.2594142259414, Blast_Score=183, Evalue=3e-46, Organism=Homo sapiens, GI50541956, Length=239, Percent_Identity=42.2594142259414, Blast_Score=183, Evalue=4e-46, Organism=Homo sapiens, GI156104880, Length=236, Percent_Identity=41.1016949152542, Blast_Score=182, Evalue=5e-46, Organism=Escherichia coli, GI1788855, Length=490, Percent_Identity=54.6938775510204, Blast_Score=494, Evalue=1e-141, Organism=Escherichia coli, GI1786293, Length=217, Percent_Identity=39.63133640553, Blast_Score=168, Evalue=8e-43, Organism=Caenorhabditis elegans, GI71994385, Length=474, Percent_Identity=39.2405063291139, Blast_Score=296, Evalue=2e-80, Organism=Caenorhabditis elegans, GI71994389, Length=422, Percent_Identity=40.7582938388626, Blast_Score=278, Evalue=4e-75, Organism=Caenorhabditis elegans, GI17560440, Length=275, Percent_Identity=36, Blast_Score=174, Evalue=6e-44, Organism=Saccharomyces cerevisiae, GI6323585, Length=487, Percent_Identity=40.6570841889117, Blast_Score=337, Evalue=3e-93, Organism=Saccharomyces cerevisiae, GI6322012, Length=487, Percent_Identity=39.8357289527721, Blast_Score=335, Evalue=9e-93, Organism=Saccharomyces cerevisiae, GI6323464, Length=478, Percent_Identity=41.4225941422594, Blast_Score=331, Evalue=2e-91, Organism=Saccharomyces cerevisiae, GI6319352, Length=385, Percent_Identity=39.4805194805195, Blast_Score=262, Evalue=9e-71, Organism=Saccharomyces cerevisiae, GI6319353, Length=142, Percent_Identity=36.6197183098592, Blast_Score=75, Evalue=2e-14, Organism=Drosophila melanogaster, GI24641071, Length=481, Percent_Identity=40.5405405405405, Blast_Score=339, Evalue=3e-93, Organism=Drosophila melanogaster, GI24641073, Length=481, Percent_Identity=40.5405405405405, Blast_Score=339, Evalue=3e-93, Organism=Drosophila melanogaster, GI28571163, Length=439, Percent_Identity=41.2300683371298, Blast_Score=310, Evalue=2e-84,
Paralogues:
None
Copy number: 600 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000644 - InterPro: IPR005990 - InterPro: IPR018529 - InterPro: IPR015875 - InterPro: IPR001093 [H]
Pfam domain/function: PF00571 CBS; PF00478 IMPDH [H]
EC number: =1.1.1.205 [H]
Molecular weight: Translated: 52356; Mature: 52225
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: PS00487 IMP_DH_GMP_RED
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIIKQAYTFDDVLLVPNKSEVLPKEVNLGTNLTKKIKLNIPLMSAGMDTVTESKMAIA CHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCHHHHHHHEEE MAREGGMGIIHKNMTIAEQASEVDKVKRQENGVIADPFYLAPNNTIQDALNLMSRYRISG EECCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEECCEEECCCCHHHHHHHHHHHHCCCC VPITKEGKLVGIITNRDILFENNYEKKIEEVMTKENLITAPENTTIGEAKDILKSHKIEK CCCCCCCCEEEEEECCEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCC LPLVDKDNNLRGLITIKDIEKVKKFPNSAKDYRGRLLCGAAVGVTKDMMERVDALVKAQV CCCCCCCCCCEEEEEEHHHHHHHHCCCCCHHHCCEEEEEHHHHHHHHHHHHHHHHHHCEE DIITVDTAHGHSKGVIEGVKKIKEKYPDIQIIAGNVATAEATRDLINAGADCIKIGIGPG EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC SICTTRVVAGVGVPQLTAVMDCVEEANKYGISVVADGGIKYSGDIVKALAAGAKAVMMGS CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEECHHHHHHHHHCHHHHHHHH MFAGCAEAPGETEIYQGRSYKVYRGMGSLAAMACGSKDRYFQEDSKKLVPEGVEGRVPFK HHHHHCCCCCCCEEECCCCEEEECCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC GPVMETIYQMLGGIRSGMGYLGSATLNDLYEKATFVIQTSSGIRESHPHDISITKEAPNY CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCEEEECCCCCC SVNQ CCCC >Mature Secondary Structure AKIIKQAYTFDDVLLVPNKSEVLPKEVNLGTNLTKKIKLNIPLMSAGMDTVTESKMAIA HHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCEEEEEEECCEEECCCCHHHHHHHEEE MAREGGMGIIHKNMTIAEQASEVDKVKRQENGVIADPFYLAPNNTIQDALNLMSRYRISG EECCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEECCEEECCCCHHHHHHHHHHHHCCCC VPITKEGKLVGIITNRDILFENNYEKKIEEVMTKENLITAPENTTIGEAKDILKSHKIEK CCCCCCCCEEEEEECCEEEEECCHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHCCCCC LPLVDKDNNLRGLITIKDIEKVKKFPNSAKDYRGRLLCGAAVGVTKDMMERVDALVKAQV CCCCCCCCCCEEEEEEHHHHHHHHCCCCCHHHCCEEEEEHHHHHHHHHHHHHHHHHHCEE DIITVDTAHGHSKGVIEGVKKIKEKYPDIQIIAGNVATAEATRDLINAGADCIKIGIGPG EEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECCCC SICTTRVVAGVGVPQLTAVMDCVEEANKYGISVVADGGIKYSGDIVKALAAGAKAVMMGS CHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEECCCEEECHHHHHHHHHCHHHHHHHH MFAGCAEAPGETEIYQGRSYKVYRGMGSLAAMACGSKDRYFQEDSKKLVPEGVEGRVPFK HHHHHCCCCCCCEEECCCCEEEECCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCC GPVMETIYQMLGGIRSGMGYLGSATLNDLYEKATFVIQTSSGIRESHPHDISITKEAPNY CHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEEEEEECCCCCCCCCCCEEEECCCCCC SVNQ CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1979163; 7584024; 9384377; 9298659 [H]