| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is cpx [H]
Identifier: 170756350
GI number: 170756350
Start: 396049
End: 397350
Strand: Direct
Name: cpx [H]
Synonym: CLD_0437
Alternate gene names: 170756350
Gene position: 396049-397350 (Clockwise)
Preceding gene: 170754224
Following gene: 170755314
Centisome position: 10.01
GC content: 32.8
Gene sequence:
>1302_bases ATGAAAAAAAATGAGACGGATATTCAGTTAATGTATGGGGTTAATGATAAGCCAAAAATATTAATGCAAATTTTATTAGG ATTGCAGCATATTTTTGCGGCTTTTGGTGGAATAATTGTTGTTCCAATTGTTATTTCAGCAGCCTTAGGCTTTGATGCTA AAATTTCAACTGCATTAATTAGTAGTGCAATTTTAGCGGCAGGGGTGGCTACTTTCATTCAGTCAAGAGGAATAGGTCCT ATTGGAGCACGTGTTGCCTGCATTATGGGAACTGATTTTACATTTGTTGCACCAGCAATTGCTGTTGGTGGAAAGTTTGG ATTATCAGGAATTTTTGGTGCAACAATTTTAGGTGCTGGTATAGTAATTATTTTAAGTTTTTTTGTTAAGCCACTAATGA AACTATTTCCACCTATTGTGACAGGAACAGTTGTGAGTTTAATTGGGTTAACATTATTACCAGTTTCAATAGATTGGGCA GCAGGTGGTGTTGGATCAGCTAATTATGGAAGTTTAAAAAATATTTCTATTGCTTTATTTATAATGATAGTTACATTATT ACTAAATCATTATGGAAAAGGATTAGTAAGTAGTGCTTCAATCTTAATAGGTATGGTTGTTGGATATATAATTTGTATTC CATTAGGAATGGTTGATTTTTCATCAGTAAGCCAAGCTAGTTGGGTATCATTACCTAAAATTTTTGGCTATGGTATAACT TTTAACTTACAGGTTTTATTACCTTTTATTCCTGCATATTTTGTTACTATCATTGGAACTGTTGGATGTCTTAAAGCCAT TACTGAAGTTTCTGGAATTAAAGAAGATGAAAAACCTATTACAGCAGGAGTCTTATCTGATGGTGTAGGAAGTATGTTAG CAGGGGTTTTTGGTGCCTTACCCAATACATCATTTAGTCAAAATATTGGATTAATTCCTCTAACAAAAGTAGCTAGCCGT TATGTAACAATGATGGCTGGAATACTATTAGTTATTTTAGGATTGTTTCCTAAATTTGCTGCACTAATCAACATAATGCC ACAGCCGGTACTTGGTGGTGTAGGAATTGTTATGTTTGGAACAGTTGCTGCAGCAGGAATTCAAACTTTAAGTAGTGTAA AGTTAAATAATAGAAATATGTTAATAATTGCTACATCCATTGGCTTAGGATTAGGAGTTACCTTCCGTCCGGAATTTATT GCTCAATTACCAGAATCCTTAAAAATGATTTTTTCATCAGGAATTTCAACTGGAACAATTGTAGCTTTATTATTAAATGT AATATTAAAAGAAAAAGAATAA
Upstream 100 bases:
>100_bases TTATCTCCTATATAGGTGGATTCTTATTTATGTACCTTAAGATGCTGTATGATAAATAAATATTTAGAGCATTAATAAAG TTAGGGAGGAGAGTAGTAAA
Downstream 100 bases:
>100_bases GGAATTTTACGGGGTGATATAAGTGGAAAAATTACAAAATCGTATTTTACAAGAAGGGCATGCATTATCTGAAACTGTAT TAAAGGTGGATTCTTTTTTA
Product: xanthine/uracil permease family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MKKNETDIQLMYGVNDKPKILMQILLGLQHIFAAFGGIIVVPIVISAALGFDAKISTALISSAILAAGVATFIQSRGIGP IGARVACIMGTDFTFVAPAIAVGGKFGLSGIFGATILGAGIVIILSFFVKPLMKLFPPIVTGTVVSLIGLTLLPVSIDWA AGGVGSANYGSLKNISIALFIMIVTLLLNHYGKGLVSSASILIGMVVGYIICIPLGMVDFSSVSQASWVSLPKIFGYGIT FNLQVLLPFIPAYFVTIIGTVGCLKAITEVSGIKEDEKPITAGVLSDGVGSMLAGVFGALPNTSFSQNIGLIPLTKVASR YVTMMAGILLVILGLFPKFAALINIMPQPVLGGVGIVMFGTVAAAGIQTLSSVKLNNRNMLIIATSIGLGLGVTFRPEFI AQLPESLKMIFSSGISTGTIVALLLNVILKEKE
Sequences:
>Translated_433_residues MKKNETDIQLMYGVNDKPKILMQILLGLQHIFAAFGGIIVVPIVISAALGFDAKISTALISSAILAAGVATFIQSRGIGP IGARVACIMGTDFTFVAPAIAVGGKFGLSGIFGATILGAGIVIILSFFVKPLMKLFPPIVTGTVVSLIGLTLLPVSIDWA AGGVGSANYGSLKNISIALFIMIVTLLLNHYGKGLVSSASILIGMVVGYIICIPLGMVDFSSVSQASWVSLPKIFGYGIT FNLQVLLPFIPAYFVTIIGTVGCLKAITEVSGIKEDEKPITAGVLSDGVGSMLAGVFGALPNTSFSQNIGLIPLTKVASR YVTMMAGILLVILGLFPKFAALINIMPQPVLGGVGIVMFGTVAAAGIQTLSSVKLNNRNMLIIATSIGLGLGVTFRPEFI AQLPESLKMIFSSGISTGTIVALLLNVILKEKE >Mature_433_residues MKKNETDIQLMYGVNDKPKILMQILLGLQHIFAAFGGIIVVPIVISAALGFDAKISTALISSAILAAGVATFIQSRGIGP IGARVACIMGTDFTFVAPAIAVGGKFGLSGIFGATILGAGIVIILSFFVKPLMKLFPPIVTGTVVSLIGLTLLPVSIDWA AGGVGSANYGSLKNISIALFIMIVTLLLNHYGKGLVSSASILIGMVVGYIICIPLGMVDFSSVSQASWVSLPKIFGYGIT FNLQVLLPFIPAYFVTIIGTVGCLKAITEVSGIKEDEKPITAGVLSDGVGSMLAGVFGALPNTSFSQNIGLIPLTKVASR YVTMMAGILLVILGLFPKFAALINIMPQPVLGGVGIVMFGTVAAAGIQTLSSVKLNNRNMLIIATSIGLGLGVTFRPEFI AQLPESLKMIFSSGISTGTIVALLLNVILKEKE
Specific function: Unknown
COG id: COG2233
COG function: function code F; Xanthine/uracil permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine/uracil permease family. Nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) subfamily [H]
Homologues:
Organism=Homo sapiens, GI44680145, Length=468, Percent_Identity=25.8547008547009, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI44680143, Length=472, Percent_Identity=25.4237288135593, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI44680148, Length=500, Percent_Identity=25, Blast_Score=114, Evalue=1e-25, Organism=Homo sapiens, GI40316845, Length=500, Percent_Identity=25, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI87082181, Length=414, Percent_Identity=39.6135265700483, Blast_Score=275, Evalue=4e-75, Organism=Escherichia coli, GI1790087, Length=452, Percent_Identity=34.7345132743363, Blast_Score=241, Evalue=6e-65, Organism=Escherichia coli, GI87082178, Length=442, Percent_Identity=34.1628959276018, Blast_Score=224, Evalue=6e-60, Organism=Escherichia coli, GI1788843, Length=394, Percent_Identity=29.9492385786802, Blast_Score=148, Evalue=8e-37, Organism=Escherichia coli, GI87081818, Length=449, Percent_Identity=28.5077951002227, Blast_Score=135, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17558856, Length=471, Percent_Identity=25.2653927813163, Blast_Score=112, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17541904, Length=455, Percent_Identity=25.0549450549451, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17542262, Length=445, Percent_Identity=24.7191011235955, Blast_Score=100, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71993493, Length=443, Percent_Identity=23.7020316027088, Blast_Score=85, Evalue=7e-17, Organism=Caenorhabditis elegans, GI193206893, Length=458, Percent_Identity=24.6724890829694, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17542260, Length=109, Percent_Identity=37.6146788990826, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21356175, Length=434, Percent_Identity=25.3456221198157, Blast_Score=110, Evalue=2e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017588 - InterPro: IPR006042 - InterPro: IPR006043 [H]
Pfam domain/function: PF00860 Xan_ur_permease [H]
EC number: NA
Molecular weight: Translated: 44980; Mature: 44980
Theoretical pI: Translated: 9.92; Mature: 9.92
Prosite motif: PS01116 XANTH_URACIL_PERMASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKNETDIQLMYGVNDKPKILMQILLGLQHIFAAFGGIIVVPIVISAALGFDAKISTALI CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SSAILAAGVATFIQSRGIGPIGARVACIMGTDFTFVAPAIAVGGKFGLSGIFGATILGAG HHHHHHHHHHHHHHHCCCCCHHHHEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH IVIILSFFVKPLMKLFPPIVTGTVVSLIGLTLLPVSIDWAAGGVGSANYGSLKNISIALF HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHH IMIVTLLLNHYGKGLVSSASILIGMVVGYIICIPLGMVDFSSVSQASWVSLPKIFGYGIT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCE FNLQVLLPFIPAYFVTIIGTVGCLKAITEVSGIKEDEKPITAGVLSDGVGSMLAGVFGAL EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHCC PNTSFSQNIGLIPLTKVASRYVTMMAGILLVILGLFPKFAALINIMPQPVLGGVGIVMFG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHH TVAAAGIQTLSSVKLNNRNMLIIATSIGLGLGVTFRPEFIAQLPESLKMIFSSGISTGTI HHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH VALLLNVILKEKE HHHHHHHHHCCCC >Mature Secondary Structure MKKNETDIQLMYGVNDKPKILMQILLGLQHIFAAFGGIIVVPIVISAALGFDAKISTALI CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH SSAILAAGVATFIQSRGIGPIGARVACIMGTDFTFVAPAIAVGGKFGLSGIFGATILGAG HHHHHHHHHHHHHHHCCCCCHHHHEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH IVIILSFFVKPLMKLFPPIVTGTVVSLIGLTLLPVSIDWAAGGVGSANYGSLKNISIALF HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCHHHHHHHH IMIVTLLLNHYGKGLVSSASILIGMVVGYIICIPLGMVDFSSVSQASWVSLPKIFGYGIT HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHCCCCE FNLQVLLPFIPAYFVTIIGTVGCLKAITEVSGIKEDEKPITAGVLSDGVGSMLAGVFGAL EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHCC PNTSFSQNIGLIPLTKVASRYVTMMAGILLVILGLFPKFAALINIMPQPVLGGVGIVMFG CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCHHHHHHHH TVAAAGIQTLSSVKLNNRNMLIIATSIGLGLGVTFRPEFIAQLPESLKMIFSSGISTGTI HHHHHHHHHHHHHEECCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH VALLLNVILKEKE HHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11792842; 8162194 [H]