| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is npr
Identifier: 170755979
GI number: 170755979
Start: 1606188
End: 1607933
Strand: Reverse
Name: npr
Synonym: CLD_3105
Alternate gene names: 170755979
Gene position: 1607933-1606188 (Counterclockwise)
Preceding gene: 170754660
Following gene: 170754349
Centisome position: 40.62
GC content: 29.9
Gene sequence:
>1746_bases ATGAAAAGTAAAAAATTATTAGCTACAGTACTAAGTGCTGTAATCACTTTTTCTACTGTTTCTGCAGTTTATGCTGCGCC TGTAGGAAAAGAAAGTAAAGTTGAACCCAAGACTACAACAATAACTTGGGAAAAAAATGAACAAAATACTAAAAAAGCTA CTACTGATGTAACTAAAAATAAATTTAACAATTCTGAGGAGATAACTAAATTCTTTGAAAAAAATATATCTAAATTTGGT GTACAAAAAGGTTCTCTTAAAAACACCAAGACTGTAAAAGACGAAAAAGGTAAAACTAACTATCATATGATTTATGAAGT AGAAGGTATACCTGTATACTATGGAAGAATTGTCTTTACAACTGAAAAAGACTCCTCCATGGATTCTATAAACGGTAGAA TTGATACTGTTTTTGAAAATGGGAATTGGAAAAACAAAATTAAACTATCAAAGGATAATGCTATAGCAAAAGCTAAAAAT GATATTGAAGATGAAAAAGCAACTAGTAAAAAGACCGATTTATATCTGTATAATTTTGAGGGCAAACCTTATGTAGTTTA TTTAGTAGATCTAATTACAGATAACGGGAGTTGGACGGTTTTCGTTAATGCCGAGGATGGTTCTATAGTAAATAAATTTA ATAATACTCCTACTTTAATTGATACTAAAGGTCAAAAATTACCCAATGCTAAAAAAATTAAAGATGAAGCTAAAAAAGCT AGTAATGCAAATAATGTAATTGATGTTCAAGGTCAAAGCGTTAAAGGAGTAGGAAGAACTAGTTTGGATGGACTAGTAAA TATTGATGTAACTTATGGAAATGGAAAATATTATTTAAAAGATAGCAATAAAAATATTTATCTATATGACTTAAAAAATC AAGTTAATGAATATGATCTATACAATTATCTTAGTAGACCTAACTATAAACAAATATTAATGAGCAAATCTGAATTAATA TCTAATTACAATAATAATTTTATAGCCAACAATCAGGTTAATTCTGTAGATGCTTATGTAAACACAAATAAAACCTATGA TTATTATAAAAACAAATTAAATAGAAACAGTATTGATAATAAGGGTATGAATATTAATGGGTTTGTTCATGTAGGTAGAA ATTATGGTAATGCTTTTTGGTACGGTCCATATGATGGGATGTTCTTTGGCGATGGCGACGGAGTATACTTCTCTTCTCTT GCAAAATCTTTAGATGTTGTAGGCCACGAATTAAGTCATGGTGTAACAAATAAAGAGTCTAATCTTAAATATGAAAATGA ATCTGGTGCCCTAAATGAATCTTTCTCAGATATTATGGGAGTAGCTGTTGAGGGTAAAAACTTTGTACTAGGTGAAGATT GCTGGGTTGCTGGAGGAGTAATGAGAGATATGGAAAATCCATCCAAAGGAGGCCAACCAGCTCATATGAAAGATTATAAA TACAAAACTATGGATGACGATAACGGTGGTGTTCATACAAATTCAGGTATAATAAACCATGCTGCTTATTTAGTTGCAGA TGGAATAGAAAAAACTGGTGCAAAAAATAGTAAAGATATTATGGGAAAAATATTCTATACAGCTAATTGCTATAAATGGG ATGAAACAACAAATTTTGCTAAGTGCAGAAATGACGTAGTCCAAGTTACTAAAGAACTTTATGGCGAAAATAGCAACTAT GTAAAAATTGTTGAAAAAGCTTTTGACCAAGTTGGAATAACTGCTACACCTCAATTACCATTATAA
Upstream 100 bases:
>100_bases TAAATATTCTTATATAAAATTATAAACCTATTAATATTTTACTATATAAATATTAATAGGTTTATAAGTAAAAATATGCT ATACTGGGGGTTATTTATTT
Downstream 100 bases:
>100_bases TAAAAGCCCTATTGAAGCTATAAATATATCTATATAAAATTATAAACCTATTGATATTTTGCTATATAAATATCAATAGG TTTATAAGTAAAAATATATT
Product: thermolysin metallopeptidase
Products: NA
Alternate protein names: Neutral protease [H]
Number of amino acids: Translated: 581; Mature: 581
Protein sequence:
>581_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKESKVEPKTTTITWEKNEQNTKKATTDVTKNKFNNSEEITKFFEKNISKFG VQKGSLKNTKTVKDEKGKTNYHMIYEVEGIPVYYGRIVFTTEKDSSMDSINGRIDTVFENGNWKNKIKLSKDNAIAKAKN DIEDEKATSKKTDLYLYNFEGKPYVVYLVDLITDNGSWTVFVNAEDGSIVNKFNNTPTLIDTKGQKLPNAKKIKDEAKKA SNANNVIDVQGQSVKGVGRTSLDGLVNIDVTYGNGKYYLKDSNKNIYLYDLKNQVNEYDLYNYLSRPNYKQILMSKSELI SNYNNNFIANNQVNSVDAYVNTNKTYDYYKNKLNRNSIDNKGMNINGFVHVGRNYGNAFWYGPYDGMFFGDGDGVYFSSL AKSLDVVGHELSHGVTNKESNLKYENESGALNESFSDIMGVAVEGKNFVLGEDCWVAGGVMRDMENPSKGGQPAHMKDYK YKTMDDDNGGVHTNSGIINHAAYLVADGIEKTGAKNSKDIMGKIFYTANCYKWDETTNFAKCRNDVVQVTKELYGENSNY VKIVEKAFDQVGITATPQLPL
Sequences:
>Translated_581_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKESKVEPKTTTITWEKNEQNTKKATTDVTKNKFNNSEEITKFFEKNISKFG VQKGSLKNTKTVKDEKGKTNYHMIYEVEGIPVYYGRIVFTTEKDSSMDSINGRIDTVFENGNWKNKIKLSKDNAIAKAKN DIEDEKATSKKTDLYLYNFEGKPYVVYLVDLITDNGSWTVFVNAEDGSIVNKFNNTPTLIDTKGQKLPNAKKIKDEAKKA SNANNVIDVQGQSVKGVGRTSLDGLVNIDVTYGNGKYYLKDSNKNIYLYDLKNQVNEYDLYNYLSRPNYKQILMSKSELI SNYNNNFIANNQVNSVDAYVNTNKTYDYYKNKLNRNSIDNKGMNINGFVHVGRNYGNAFWYGPYDGMFFGDGDGVYFSSL AKSLDVVGHELSHGVTNKESNLKYENESGALNESFSDIMGVAVEGKNFVLGEDCWVAGGVMRDMENPSKGGQPAHMKDYK YKTMDDDNGGVHTNSGIINHAAYLVADGIEKTGAKNSKDIMGKIFYTANCYKWDETTNFAKCRNDVVQVTKELYGENSNY VKIVEKAFDQVGITATPQLPL >Mature_581_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKESKVEPKTTTITWEKNEQNTKKATTDVTKNKFNNSEEITKFFEKNISKFG VQKGSLKNTKTVKDEKGKTNYHMIYEVEGIPVYYGRIVFTTEKDSSMDSINGRIDTVFENGNWKNKIKLSKDNAIAKAKN DIEDEKATSKKTDLYLYNFEGKPYVVYLVDLITDNGSWTVFVNAEDGSIVNKFNNTPTLIDTKGQKLPNAKKIKDEAKKA SNANNVIDVQGQSVKGVGRTSLDGLVNIDVTYGNGKYYLKDSNKNIYLYDLKNQVNEYDLYNYLSRPNYKQILMSKSELI SNYNNNFIANNQVNSVDAYVNTNKTYDYYKNKLNRNSIDNKGMNINGFVHVGRNYGNAFWYGPYDGMFFGDGDGVYFSSL AKSLDVVGHELSHGVTNKESNLKYENESGALNESFSDIMGVAVEGKNFVLGEDCWVAGGVMRDMENPSKGGQPAHMKDYK YKTMDDDNGGVHTNSGIINHAAYLVADGIEKTGAKNSKDIMGKIFYTANCYKWDETTNFAKCRNDVVQVTKELYGENSNY VKIVEKAFDQVGITATPQLPL
Specific function: Extracellular zinc metalloprotease [H]
COG id: COG3227
COG function: function code E; Zinc metalloprotease (elastase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005075 - InterPro: IPR013856 - InterPro: IPR001570 - InterPro: IPR011096 [H]
Pfam domain/function: PF07504 FTP; PF03413 PepSY; PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]
EC number: =3.4.24.28 [H]
Molecular weight: Translated: 65067; Mature: 65067
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKKLLATVLSAVITFSTVSAVYAAPVGKESKVEPKTTTITWEKNEQNTKKATTDVTKN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH KFNNSEEITKFFEKNISKFGVQKGSLKNTKTVKDEKGKTNYHMIYEVEGIPVYYGRIVFT HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEE TEKDSSMDSINGRIDTVFENGNWKNKIKLSKDNAIAKAKNDIEDEKATSKKTDLYLYNFE ECCCCCHHHCCCEEEEEEECCCCCCEEEECCCCCHHHHHCCCCHHHCCCCCCEEEEEEEC GKPYVVYLVDLITDNGSWTVFVNAEDGSIVNKFNNTPTLIDTKGQKLPNAKKIKDEAKKA CCEEEEEEEEEEECCCCEEEEEECCCCCEEECCCCCCCEEECCCCCCCCHHHHHHHHHHC SNANNVIDVQGQSVKGVGRTSLDGLVNIDVTYGNGKYYLKDSNKNIYLYDLKNQVNEYDL CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCCCHHHH YNYLSRPNYKQILMSKSELISNYNNNFIANNQVNSVDAYVNTNKTYDYYKNKLNRNSIDN HHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCC KGMNINGFVHVGRNYGNAFWYGPYDGMFFGDGDGVYFSSLAKSLDVVGHELSHGVTNKES CCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC NLKYENESGALNESFSDIMGVAVEGKNFVLGEDCWVAGGVMRDMENPSKGGQPAHMKDYK CCEECCCCCCCCCCHHHHHEEEECCCEEEECCCCEEECCHHHHCCCCCCCCCCCCCCCCE YKTMDDDNGGVHTNSGIINHAAYLVADGIEKTGAKNSKDIMGKIFYTANCYKWDETTNFA EEECCCCCCCEECCCCHHHHHHHEEECCHHHCCCCCCHHHEEEEEEEEEEEECCCCCCHH KCRNDVVQVTKELYGENSNYVKIVEKAFDQVGITATPQLPL HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKSKKLLATVLSAVITFSTVSAVYAAPVGKESKVEPKTTTITWEKNEQNTKKATTDVTKN CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH KFNNSEEITKFFEKNISKFGVQKGSLKNTKTVKDEKGKTNYHMIYEVEGIPVYYGRIVFT HCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEEEE TEKDSSMDSINGRIDTVFENGNWKNKIKLSKDNAIAKAKNDIEDEKATSKKTDLYLYNFE ECCCCCHHHCCCEEEEEEECCCCCCEEEECCCCCHHHHHCCCCHHHCCCCCCEEEEEEEC GKPYVVYLVDLITDNGSWTVFVNAEDGSIVNKFNNTPTLIDTKGQKLPNAKKIKDEAKKA CCEEEEEEEEEEECCCCEEEEEECCCCCEEECCCCCCCEEECCCCCCCCHHHHHHHHHHC SNANNVIDVQGQSVKGVGRTSLDGLVNIDVTYGNGKYYLKDSNKNIYLYDLKNQVNEYDL CCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCEEEEEECCCCCCHHHH YNYLSRPNYKQILMSKSELISNYNNNFIANNQVNSVDAYVNTNKTYDYYKNKLNRNSIDN HHHHCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCHHHHHHCCCCCCCCC KGMNINGFVHVGRNYGNAFWYGPYDGMFFGDGDGVYFSSLAKSLDVVGHELSHGVTNKES CCCCEEEEEEECCCCCCEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCC NLKYENESGALNESFSDIMGVAVEGKNFVLGEDCWVAGGVMRDMENPSKGGQPAHMKDYK CCEECCCCCCCCCCHHHHHEEEECCCEEEECCCCEEECCHHHHCCCCCCCCCCCCCCCCE YKTMDDDNGGVHTNSGIINHAAYLVADGIEKTGAKNSKDIMGKIFYTANCYKWDETTNFA EEECCCCCCCEECCCCHHHHHHHEEECCHHHCCCCCCHHHEEEEEEEEEEEECCCCCCHH KCRNDVVQVTKELYGENSNYVKIVEKAFDQVGITATPQLPL HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7764969 [H]