| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is nprM [H]
Identifier: 170754660
GI number: 170754660
Start: 1608054
End: 1609793
Strand: Reverse
Name: nprM [H]
Synonym: CLD_3104
Alternate gene names: 170754660
Gene position: 1609793-1608054 (Counterclockwise)
Preceding gene: 170757583
Following gene: 170755979
Centisome position: 40.67
GC content: 30.75
Gene sequence:
>1740_bases ATGAAAAGTAAAAAATTATTAGCTACAGTGTTAAGTGCTGTAATCACTTTTTCCACTGTTTCAGCAGTTTATGCTGCACC TGTAGGAAAAGAGAATAAAAGTGAGCCAAAAACCACAACAATATTTTGGGGAAACAACACACAAAATACCAGAAAAGCTA CTACTGGCATAACTCAAGAGAAATTTAACAATTCTCAGGATATAACTAATTTCTTTGAAAAGAACATCTCTAAATTTGGT GTAAAGAAAGGTTCTCTTAAAAATACTAAAGTTGTAAAAGCTGACAAAGGTAAAACTAACTATCATATGATCTATCAAGT AGATGATATCCCTGTATATTATGGAAGAATTGTTTTTACAACTAAAAAAGACTCATCTATAGACTCTATAACTGGTAGAA TTGATGCTACTTTTGAAAATGACAGTTGGAAAGACAAAGTAAAACTATCAAAGGATAATGCTATAGAAAAAGCTAAAGAT AGCATAAAATGCGATAGCTTATCTAAAAGCAATGCAGATTTATATTTATACAATTTTGAAGGAAAACCTTATGTAGCTTA TTTAGTTAATTTGGTTGCAGATAATGGAGATTGGAATGTTTTTGTTAATGCTGAAGATGGTTCTATAGTAAATCAATTTA ACAACACCCCTACCCTAATTGATAATAAAGATGAAGATTTACCTAATGCTGAAGAAATTAAAAAAGCTTCCAAAGAACCT GCCAATATAAATAGTGTAATAAATGTTAATGGTGAAACTGTTAAAGGACAAGGTAAAACTACTTTAGACGGAATAGTTGA TATTGATTTAACTTATAAAGACGGTAAATATTATTTGAAAGATAGTAATAAAAATGTTTATCTATATGACGTAAATCATA GTCTTACTCCTATGTATTCTCGCTTTAAAGATCGTATATTAAGACACTCAACTCTTGTAGAAAATAACAGCAATAAATTT ACAAGTGATGAACATGTTACTGCAGTAGATGGTTACGTTAATTTATCAAAAACTTATGATTACTATAAAAATAAGTTTAA TAGAAATAGTATAGATAATAACGGTATGAATGTTGAAGGATTTATCCATACTGGTGTAAAATACAATAATGCCTTTTGGA GAGATGATCTTGGTTCTATGTTCTTCGGTGATGGAGATGGAGTAAGATTCTCTTCCTTTGCAAGTGCTTTAGATGTTGTA GGTCATGAAGTGAGCCATGGTATAACTAGTAAGGAATCCAAGCTTAAATATGAAAAAGAGTCTGGTGCTTTAAATGAATC CTTCTCTGATATTATGGGCGTAGCTATAGAAGGAAAAAATTTCCAAATAGGTGAAGACTGCTACACACCAAATATTCCTG GAGATGCATTGAGAGATATGGAAGACCCATCTAAAGGAAATCAACCAGCTCATATGAAAGACTTTAAAAATCTTCCTAAT GATAAAGACAATGATTGGGGTGGAGTTCATACAAATTCAGGTATAATAAATCATGCTGCTTATTTAATTGCAGTTGGAAT GGAAAAATCCGGTGAGTCAAATGGTAAAGATATTATGGCAAATTTATTTTATAAAGCAAATTGCCATTACTGGGATGAAA CAACAGACTTTGCTAAATGCAGAAATGATGTAGTTCAAGTTGCTAAAGATATTTATGGGGAAAATAGTAAATATGTTAAA ATTGTAGAAAATGCTTTCGACCAAGTTGGAATAACTGCCACACCTCAATTACCATTATAA
Upstream 100 bases:
>100_bases TAATTGGTTAATATGTGAAATTGTTATTCATTTTCAATATTGATATAATTAATATTGAAAATTCCAATTAATCATAAATT TGCTAGGGGGTTATTTATTT
Downstream 100 bases:
>100_bases TTAAAAATATTTTAATTATATAAATATTCTTATATAAAATTATAAACCTATTAATATTTTACTATATAAATATTAATAGG TTTATAAGTAAAAATATGCT
Product: bacillolysin
Products: NA
Alternate protein names: Neutral protease [H]
Number of amino acids: Translated: 579; Mature: 579
Protein sequence:
>579_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKENKSEPKTTTIFWGNNTQNTRKATTGITQEKFNNSQDITNFFEKNISKFG VKKGSLKNTKVVKADKGKTNYHMIYQVDDIPVYYGRIVFTTKKDSSIDSITGRIDATFENDSWKDKVKLSKDNAIEKAKD SIKCDSLSKSNADLYLYNFEGKPYVAYLVNLVADNGDWNVFVNAEDGSIVNQFNNTPTLIDNKDEDLPNAEEIKKASKEP ANINSVINVNGETVKGQGKTTLDGIVDIDLTYKDGKYYLKDSNKNVYLYDVNHSLTPMYSRFKDRILRHSTLVENNSNKF TSDEHVTAVDGYVNLSKTYDYYKNKFNRNSIDNNGMNVEGFIHTGVKYNNAFWRDDLGSMFFGDGDGVRFSSFASALDVV GHEVSHGITSKESKLKYEKESGALNESFSDIMGVAIEGKNFQIGEDCYTPNIPGDALRDMEDPSKGNQPAHMKDFKNLPN DKDNDWGGVHTNSGIINHAAYLIAVGMEKSGESNGKDIMANLFYKANCHYWDETTDFAKCRNDVVQVAKDIYGENSKYVK IVENAFDQVGITATPQLPL
Sequences:
>Translated_579_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKENKSEPKTTTIFWGNNTQNTRKATTGITQEKFNNSQDITNFFEKNISKFG VKKGSLKNTKVVKADKGKTNYHMIYQVDDIPVYYGRIVFTTKKDSSIDSITGRIDATFENDSWKDKVKLSKDNAIEKAKD SIKCDSLSKSNADLYLYNFEGKPYVAYLVNLVADNGDWNVFVNAEDGSIVNQFNNTPTLIDNKDEDLPNAEEIKKASKEP ANINSVINVNGETVKGQGKTTLDGIVDIDLTYKDGKYYLKDSNKNVYLYDVNHSLTPMYSRFKDRILRHSTLVENNSNKF TSDEHVTAVDGYVNLSKTYDYYKNKFNRNSIDNNGMNVEGFIHTGVKYNNAFWRDDLGSMFFGDGDGVRFSSFASALDVV GHEVSHGITSKESKLKYEKESGALNESFSDIMGVAIEGKNFQIGEDCYTPNIPGDALRDMEDPSKGNQPAHMKDFKNLPN DKDNDWGGVHTNSGIINHAAYLIAVGMEKSGESNGKDIMANLFYKANCHYWDETTDFAKCRNDVVQVAKDIYGENSKYVK IVENAFDQVGITATPQLPL >Mature_579_residues MKSKKLLATVLSAVITFSTVSAVYAAPVGKENKSEPKTTTIFWGNNTQNTRKATTGITQEKFNNSQDITNFFEKNISKFG VKKGSLKNTKVVKADKGKTNYHMIYQVDDIPVYYGRIVFTTKKDSSIDSITGRIDATFENDSWKDKVKLSKDNAIEKAKD SIKCDSLSKSNADLYLYNFEGKPYVAYLVNLVADNGDWNVFVNAEDGSIVNQFNNTPTLIDNKDEDLPNAEEIKKASKEP ANINSVINVNGETVKGQGKTTLDGIVDIDLTYKDGKYYLKDSNKNVYLYDVNHSLTPMYSRFKDRILRHSTLVENNSNKF TSDEHVTAVDGYVNLSKTYDYYKNKFNRNSIDNNGMNVEGFIHTGVKYNNAFWRDDLGSMFFGDGDGVRFSSFASALDVV GHEVSHGITSKESKLKYEKESGALNESFSDIMGVAIEGKNFQIGEDCYTPNIPGDALRDMEDPSKGNQPAHMKDFKNLPN DKDNDWGGVHTNSGIINHAAYLIAVGMEKSGESNGKDIMANLFYKANCHYWDETTDFAKCRNDVVQVAKDIYGENSKYVK IVENAFDQVGITATPQLPL
Specific function: Extracellular zinc metalloprotease [H]
COG id: COG3227
COG function: function code E; Zinc metalloprotease (elastase)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005075 - InterPro: IPR013856 - InterPro: IPR001570 - InterPro: IPR011096 [H]
Pfam domain/function: PF07504 FTP; PF03413 PepSY; PF01447 Peptidase_M4; PF02868 Peptidase_M4_C [H]
EC number: =3.4.24.28 [H]
Molecular weight: Translated: 64681; Mature: 64681
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKKLLATVLSAVITFSTVSAVYAAPVGKENKSEPKTTTIFWGNNTQNTRKATTGITQE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCHH KFNNSQDITNFFEKNISKFGVKKGSLKNTKVVKADKGKTNYHMIYQVDDIPVYYGRIVFT HCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEEEEE TKKDSSIDSITGRIDATFENDSWKDKVKLSKDNAIEKAKDSIKCDSLSKSNADLYLYNFE ECCCCCCHHHCCEEEEEECCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEEC GKPYVAYLVNLVADNGDWNVFVNAEDGSIVNQFNNTPTLIDNKDEDLPNAEEIKKASKEP CCCHHHEEEEHHCCCCCEEEEEECCCCCHHHHCCCCCCEECCCCCCCCCHHHHHHHCCCC ANINSVINVNGETVKGQGKTTLDGIVDIDLTYKDGKYYLKDSNKNVYLYDVNHSLTPMYS CCCCEEEECCCCEEECCCCEEECCEEEEEEEEECCEEEEEECCCEEEEEECCCCCCHHHH RFKDRILRHSTLVENNSNKFTSDEHVTAVDGYVNLSKTYDYYKNKFNRNSIDNNGMNVEG HHHHHHHHHHHHEECCCCCCCCCCCEEEECCEEECHHHHHHHHCCCCCCCCCCCCCEEEE FIHTGVKYNNAFWRDDLGSMFFGDGDGVRFSSFASALDVVGHEVSHGITSKESKLKYEKE EEECCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEECHH SGALNESFSDIMGVAIEGKNFQIGEDCYTPNIPGDALRDMEDPSKGNQPAHMKDFKNLPN CCCCCCCHHHHEEEEEECCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCC DKDNDWGGVHTNSGIINHAAYLIAVGMEKSGESNGKDIMANLFYKANCHYWDETTDFAKC CCCCCCCCEECCCCHHHHEEEEEEEECCCCCCCCCHHHEEEEEEEECCEECCCCCHHHHH RNDVVQVAKDIYGENSKYVKIVENAFDQVGITATPQLPL HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCC >Mature Secondary Structure MKSKKLLATVLSAVITFSTVSAVYAAPVGKENKSEPKTTTIFWGNNTQNTRKATTGITQE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCHHHHCCCCHH KFNNSQDITNFFEKNISKFGVKKGSLKNTKVVKADKGKTNYHMIYQVDDIPVYYGRIVFT HCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCEEEEEEEEEE TKKDSSIDSITGRIDATFENDSWKDKVKLSKDNAIEKAKDSIKCDSLSKSNADLYLYNFE ECCCCCCHHHCCEEEEEECCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCEEEEEEC GKPYVAYLVNLVADNGDWNVFVNAEDGSIVNQFNNTPTLIDNKDEDLPNAEEIKKASKEP CCCHHHEEEEHHCCCCCEEEEEECCCCCHHHHCCCCCCEECCCCCCCCCHHHHHHHCCCC ANINSVINVNGETVKGQGKTTLDGIVDIDLTYKDGKYYLKDSNKNVYLYDVNHSLTPMYS CCCCEEEECCCCEEECCCCEEECCEEEEEEEEECCEEEEEECCCEEEEEECCCCCCHHHH RFKDRILRHSTLVENNSNKFTSDEHVTAVDGYVNLSKTYDYYKNKFNRNSIDNNGMNVEG HHHHHHHHHHHHEECCCCCCCCCCCEEEECCEEECHHHHHHHHCCCCCCCCCCCCCEEEE FIHTGVKYNNAFWRDDLGSMFFGDGDGVRFSSFASALDVVGHEVSHGITSKESKLKYEKE EEECCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEECHH SGALNESFSDIMGVAIEGKNFQIGEDCYTPNIPGDALRDMEDPSKGNQPAHMKDFKNLPN CCCCCCCHHHHEEEEEECCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHCCCC DKDNDWGGVHTNSGIINHAAYLIAVGMEKSGESNGKDIMANLFYKANCHYWDETTDFAKC CCCCCCCCEECCCCHHHHEEEEEEEECCCCCCCCCHHHEEEEEEEECCEECCCCCHHHHH RNDVVQVAKDIYGENSKYVKIVENAFDQVGITATPQLPL HHHHHHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7764969 [H]