Definition | Clostridium botulinum B1 str. Okra, complete genome. |
---|---|
Accession | NC_010516 |
Length | 3,958,233 |
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The map label for this gene is yhbQ [C]
Identifier: 170754862
GI number: 170754862
Start: 3637356
End: 3637610
Strand: Reverse
Name: yhbQ [C]
Synonym: CLD_1175
Alternate gene names: 170754862
Gene position: 3637610-3637356 (Counterclockwise)
Preceding gene: 170757116
Following gene: 170755400
Centisome position: 91.9
GC content: 30.2
Gene sequence:
>255_bases ATGTCATATGTTTATATCGTAGAGTGCAGGGATGGAACTTTATATACAGGATGGACAACGGATATTGAAAGAAGAATAGG TCAGCACAATAAAGGAACAGGTGCAAAATATACAAGAGCAAGAAGACCAGTAGTTTTAAAATATTTTGAGAAATTTGATA CAAAAAGAGAAGCTATGAAAAGGGAATGTGAAATAAAAATGTTGTCTAGAAAGGATAAAATAAAATTATTTGATTATAAT CAGTCGAAATGGTAA
Upstream 100 bases:
>100_bases AAATAATAACTATAGAAAATAATAATACATTAAGCAGTAATTTTATTATAAATGTAGAATATATAAGATGTAGAATATAT TGAGAAAAGGATTGTTTTAT
Downstream 100 bases:
>100_bases ATAATATTATTATTTACAAAAATAATAAAAAACATAGGATTAAATATAAATATAAAGTTATAAAAATTAAACTTAGTTAA GCTATTGACAATGTTTGTAA
Product: GIY-YIG domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 84; Mature: 83
Protein sequence:
>84_residues MSYVYIVECRDGTLYTGWTTDIERRIGQHNKGTGAKYTRARRPVVLKYFEKFDTKREAMKRECEIKMLSRKDKIKLFDYN QSKW
Sequences:
>Translated_84_residues MSYVYIVECRDGTLYTGWTTDIERRIGQHNKGTGAKYTRARRPVVLKYFEKFDTKREAMKRECEIKMLSRKDKIKLFDYN QSKW >Mature_83_residues SYVYIVECRDGTLYTGWTTDIERRIGQHNKGTGAKYTRARRPVVLKYFEKFDTKREAMKRECEIKMLSRKDKIKLFDYNQ SKW
Specific function: Unknown
COG id: COG2827
COG function: function code L; Predicted endonuclease containing a URI domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0213 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000305 [H]
Pfam domain/function: PF01541 GIY-YIG [H]
EC number: NA
Molecular weight: Translated: 10178; Mature: 10047
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYVYIVECRDGTLYTGWTTDIERRIGQHNKGTGAKYTRARRPVVLKYFEKFDTKREAMK CCEEEEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHH RECEIKMLSRKDKIKLFDYNQSKW HHHHHHCCCCCCCEEEEECCCCCC >Mature Secondary Structure SYVYIVECRDGTLYTGWTTDIERRIGQHNKGTGAKYTRARRPVVLKYFEKFDTKREAMK CEEEEEEECCCEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHH RECEIKMLSRKDKIKLFDYNQSKW HHHHHHCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11016950 [H]