Click here to switch to the map view.

The map label for this gene is rarD [C]

Identifier: 170748578

GI number: 170748578

Start: 2302702

End: 2303598

Strand: Reverse

Name: rarD [C]

Synonym: Mrad2831_2160

Alternate gene names: 170748578

Gene position: 2303598-2302702 (Counterclockwise)

Preceding gene: 170748579

Following gene: 170748577

Centisome position: 37.9

GC content: 72.13

Gene sequence:

>897_bases
GTGGGCCTCGTCTACGCGCTCGCCGCCTACCTGAGCTGGGGCCTCCTGGTCCCGGTGCATTTCCGGATGCTCGGCGCCTA
CTCCCCGTACCACATCCTGTCGGAGCGGATCGTCTGGTCGAGCGTGTTCGCCGGCGCGCTGGCACTGATCCTCGCGGCGC
GCCACCGCCTGAACCTGCCGCTGCCGCTCCGGAAGCGCCACGCGCTGCTGCTGCTCTCGGCGGGGATGATCGGCGTGAAC
TGGCTGCTCTACCTCTACGCGGTCAGCGGCGGGCACCTGCTCGACGCGAGCCTCGGCTACTACATCAATCCCCTGGTCAG
CGTCGCCCTCGGCCGGGTGGTGCTGGGCGAGCGCCTGCGGCCGGCGCAGGCCGTCGCCATCGGCATCGCCGCGACGGGCG
TCGCCGTCGCGGTGGTGTGGGCCGGGGAACTGCCCCTGATGTCGCTGTCGCTGGCAGTGAGCTTCGCGCTCTACGGCCTC
GCCCGGAAGATCGTCGGCGTCGACGCGCTGGTCGGCTTCCTGGCCGAGACGCTGCTGCTCCTGCCGGCCGCGCTCGTCTG
GCTCGTCCTGTCACCCGAGCCGTTCCTGCCGGCCGCGCCGGGCGACCGCGCCCTGCTGATGCTCACCGGCCTGACGACCG
CGCTGCCGCTGATCTGGTTCGCCGCCGCGGCGGTGCGCCTGCGGCTCACGACCTTGGGTCTCCTGCAATACGTGGCGCCG
ACCTGCCTGCTCGTCCTGAGCGTCCTCGTCTACGGCGAGCGGGTCGAGCCGCATCGAGCGCTGATGCTCGCGCTGATCTG
GGTGGCGCTCGCGCTCTACACGATCGACGCTCTGCGGTTTCGCCGGCCGCCGGCCCCCGCGGCCCCGCGGTCGGATCCCG
ACGCGATGCGTGTATAA

Upstream 100 bases:

>100_bases
CCGGGATGGCAGCCCTGCGCCGCCCCCCCCTGACGGCGGCCAGGCCGGCGCGCTAAACCCCCTGACCCGGCCGCCGAACC
GGGTCGATCGGGAGGAGTCC

Downstream 100 bases:

>100_bases
GGAGTACGGGTATAAGCCGCCGCGGGGCGGGTGACGGGACAGCGTCGGGTCGATGAGCGAGACTGAGAGCGGCCCAGGAT
CCGTCACGGATGCCGATTAC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MGLVYALAAYLSWGLLVPVHFRMLGAYSPYHILSERIVWSSVFAGALALILAARHRLNLPLPLRKRHALLLLSAGMIGVN
WLLYLYAVSGGHLLDASLGYYINPLVSVALGRVVLGERLRPAQAVAIGIAATGVAVAVVWAGELPLMSLSLAVSFALYGL
ARKIVGVDALVGFLAETLLLLPAALVWLVLSPEPFLPAAPGDRALLMLTGLTTALPLIWFAAAAVRLRLTTLGLLQYVAP
TCLLVLSVLVYGERVEPHRALMLALIWVALALYTIDALRFRRPPAPAAPRSDPDAMRV

Sequences:

>Translated_298_residues
MGLVYALAAYLSWGLLVPVHFRMLGAYSPYHILSERIVWSSVFAGALALILAARHRLNLPLPLRKRHALLLLSAGMIGVN
WLLYLYAVSGGHLLDASLGYYINPLVSVALGRVVLGERLRPAQAVAIGIAATGVAVAVVWAGELPLMSLSLAVSFALYGL
ARKIVGVDALVGFLAETLLLLPAALVWLVLSPEPFLPAAPGDRALLMLTGLTTALPLIWFAAAAVRLRLTTLGLLQYVAP
TCLLVLSVLVYGERVEPHRALMLALIWVALALYTIDALRFRRPPAPAAPRSDPDAMRV
>Mature_297_residues
GLVYALAAYLSWGLLVPVHFRMLGAYSPYHILSERIVWSSVFAGALALILAARHRLNLPLPLRKRHALLLLSAGMIGVNW
LLYLYAVSGGHLLDASLGYYINPLVSVALGRVVLGERLRPAQAVAIGIAATGVAVAVVWAGELPLMSLSLAVSFALYGLA
RKIVGVDALVGFLAETLLLLPAALVWLVLSPEPFLPAAPGDRALLMLTGLTTALPLIWFAAAAVRLRLTTLGLLQYVAPT
CLLVLSVLVYGERVEPHRALMLALIWVALALYTIDALRFRRPPAPAAPRSDPDAMRV

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=285, Percent_Identity=41.4035087719298, Blast_Score=204, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31999; Mature: 31868

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLVYALAAYLSWGLLVPVHFRMLGAYSPYHILSERIVWSSVFAGALALILAARHRLNLP
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPLRKRHALLLLSAGMIGVNWLLYLYAVSGGHLLDASLGYYINPLVSVALGRVVLGERLR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
PAQAVAIGIAATGVAVAVVWAGELPLMSLSLAVSFALYGLARKIVGVDALVGFLAETLLL
CHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPAALVWLVLSPEPFLPAAPGDRALLMLTGLTTALPLIWFAAAAVRLRLTTLGLLQYVAP
HHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCLLVLSVLVYGERVEPHRALMLALIWVALALYTIDALRFRRPPAPAAPRSDPDAMRV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GLVYALAAYLSWGLLVPVHFRMLGAYSPYHILSERIVWSSVFAGALALILAARHRLNLP
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
LPLRKRHALLLLSAGMIGVNWLLYLYAVSGGHLLDASLGYYINPLVSVALGRVVLGERLR
CCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCC
PAQAVAIGIAATGVAVAVVWAGELPLMSLSLAVSFALYGLARKIVGVDALVGFLAETLLL
CHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPAALVWLVLSPEPFLPAAPGDRALLMLTGLTTALPLIWFAAAAVRLRLTTLGLLQYVAP
HHHHHHHHHCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TCLLVLSVLVYGERVEPHRALMLALIWVALALYTIDALRFRRPPAPAAPRSDPDAMRV
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]