Definition Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome.
Accession NC_010503
Length 751,679

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The map label for this gene is gidA

Identifier: 170762033

GI number: 170762033

Start: 41825

End: 43669

Strand: Direct

Name: gidA

Synonym: UPA3_0038

Alternate gene names: 170762033

Gene position: 41825-43669 (Clockwise)

Preceding gene: 170762241

Following gene: 170762322

Centisome position: 5.56

GC content: 29.92

Gene sequence:

>1845_bases
GTGAAAAAATATGATGTAATTGTCATTGGTGCTGGACACGCAGGATTAGAAGCAGCTTTTGCAACTTCTAATCTTAATTT
ACAAACAGCATTAATTACATTGGATGAAAAAGGGATTGGGATGATGCCATGCAATCCTTCAATAGGAGGGCCGGCTAAAG
GAATTGTTACACGTGAAATTGATGCCCTTGGTGGTATTCAAGGTAAGGCAGCTGATGCTACAACAATGCAAATGAAAATC
TTAAATTCATCAAAAGGACCAGGTGTTTGAGCGATTCGTGCACAAATTGATAAAATTGCTTACCAACGATGATTTAAGCA
ACAAATTAAACAACAAAAAAATTTAGATTTAATCATTGCTGAGGTTAGTGATCTATTAGTAGAAAATAACATTGTTAAAG
GTGTTGTTTTAAGTGATCAAAAAATCATCCAAGCTGATTATGTAATTATTACAACAGGAACTTATTTAAAATCAATTACT
CATCGTGGTTCGGTTTGTGTTGATGAAGGAGCAGATGGTACAAAAAATGCTAAATTTTTAAGTGATGCATTAGTGAAATT
AGGATTTGAGTTAATTCGTTTAAAAACAGGGACTCCTGCAAGAATTAAAAAAGATTCGATTGATTTTACAAATATGATTC
TTGAACCTGGTACAAATCAAAAAATTGCTTTTAGTCACTATCACCCTGTTTATAAACCTTATGACGAACAACTTCCTTGT
CATATTATTTATACAAACGAACAAACTCACCAAATTATTCGAGAAAATTTAAATAAATCAGCAATGTATGGGGGTATGAT
TTCTGGAATTGGGCCACGTTATTGCCCTTCAATTGAAGATAAAATTGTTAAATTTAGTGAAAAACCGCGTCACCAAATTT
TTGTTGAACCAGAATCTTATGAATTAGATTCAATGTACTTAGGTGGTTTTTCTACTTCAATGCCAATCGATGTTCAAGAA
AAAATGATTCGTAGTTTACCAGGATTAGAAAACTGTGAAATACTAAAATATGCTTACGCTATTGAATATGATGCTATTGA
TCCAACCCAACTATATCCTAGTTTAGAATCAAAATTAGTTAATAATTTATTTTTTGCTGGTCAAATCAATGGAACTAGTG
GCTATGAAGAAGCAGCGGCCCAAGGATTAATGGCTGCAATTAATGTTAATCAAAAATATCAAAATAAAGAACCTGTCATT
TTAGGTCGTGATCAAGCATATATTGGCGTTATGATTGATGATATTGTTACCAAAGGCGTTGTTGAACCATATCGTTTACT
AACAAGCCGTGCGGAACACCGATTAGCATTAAGAAATGATAATGCTGATGATCGATTAATGAAAATTGGTTTTGAAATTG
GTTTATTAAAACCAGAAGTATATGACCAATACTTAAATAATTTAAAACAAATTAAAGAAATCTTAAACTGATTAAAAACA
ACAACTGTTGGCCAAATTGATGACTTAAAATTTACAACTCTAAAAACAAATAGTTATTTAATCGATTATTTAAAACGTCC
TGAAATTAAATTAAATGATTTATTAATTTATTGTCCTATAAAAATTGAAGATGAACAAATTATCAATAAGGTACAAATTC
AAGTTAAATTTGAAGGTTATATTAAAAATCAAGAAGAAAACTTAAAACAATTAAAGCGTTTAAATAATATTAAACTTCAT
GCAATTGTTGATTATAAAGAAGTGCCAAATATTTCTTTAGAAACAATTGATAAATTAAATAAGATTAAACCTCTTGATCT
TGAACAAGCAAGTCGGATTAGTGGGGTTAATTTAACAGACATTGCAATGATTAAATATTATTTAGAAAGAATTAAAAATG
ACTAG

Upstream 100 bases:

>100_bases
ATGAAAAATTAAAACTAATCAATAAATCACGTTGTTAAAAAATTTTCTCTTCTTTAATCTTGTTATAATTCTTAGTTAGT
AATAGTTTAGGTGGTTAAAC

Downstream 100 bases:

>100_bases
AAAAGATTTTTTTAATGTTTTAACTAGATATTTTCCTTGAGTTGATGAACAAACTTTTATGAGTTTTGAAAAGTATAAAA
CAATTATTCAAAAATATAAT

Product: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA

Products: NA

Alternate protein names: Glucose-inhibited division protein A [H]

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI
LNSSKGPGVWAIRAQIDKIAYQRWFKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT
HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC
HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE
KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI
LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNWLKT
TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH
AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND

Sequences:

>Translated_614_residues
MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI
LNSSKGPGV*AIRAQIDKIAYQR*FKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT
HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC
HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE
KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI
LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILN*LKT
TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH
AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND
>Mature_614_residues
MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREIDALGGIQGKAADATTMQMKI
LNSSKGPGV*AIRAQIDKIAYQR*FKQQIKQQKNLDLIIAEVSDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSIT
HRGSVCVDEGADGTKNAKFLSDALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPC
HIIYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYELDSMYLGGFSTSMPIDVQE
KMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNNLFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVI
LGRDQAYIGVMIDDIVTKGVVEPYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILN*LKT
TTVGQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKNQEENLKQLKRLNNIKLH
AIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAMIKYYLERIKND

Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]

COG id: COG0445

COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family [H]

Homologues:

Organism=Homo sapiens, GI74024895, Length=617, Percent_Identity=37.1150729335494, Blast_Score=372, Evalue=1e-103,
Organism=Homo sapiens, GI19882217, Length=642, Percent_Identity=35.6697819314642, Blast_Score=358, Evalue=1e-98,
Organism=Homo sapiens, GI183227703, Length=657, Percent_Identity=34.855403348554, Blast_Score=352, Evalue=4e-97,
Organism=Escherichia coli, GI2367273, Length=617, Percent_Identity=44.5705024311183, Blast_Score=504, Evalue=1e-144,
Organism=Caenorhabditis elegans, GI17534255, Length=614, Percent_Identity=36.1563517915309, Blast_Score=390, Evalue=1e-109,
Organism=Saccharomyces cerevisiae, GI6321202, Length=633, Percent_Identity=41.7061611374408, Blast_Score=445, Evalue=1e-126,
Organism=Drosophila melanogaster, GI24658174, Length=628, Percent_Identity=36.624203821656, Blast_Score=384, Evalue=1e-106,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004416
- InterPro:   IPR002218
- InterPro:   IPR020595 [H]

Pfam domain/function: PF01134 GIDA [H]

EC number: NA

Molecular weight: Translated: 68581; Mature: 68581

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS01280 GIDA_1 ; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREI
CCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEEEEEH
DALGGIQGKAADATTMQMKILNSSKGPGVAIRAQIDKIAYQRFKQQIKQQKNLDLIIAEV
HHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHH
SDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLSD
HHHHHHCCCEEEEEECCCEEEEECEEEEECCHHHHHHHCCCCEEEECCCCCCCCHHHHHH
ALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCHI
HHHHCCEEEEEEECCCCCCEECCCCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCEEE
IYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYEL
EEECCHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCC
DSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNN
CCEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHC
LFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVVE
EEEEEEECCCCCHHHHHHCCEEEEEECCHHCCCCCCEEEECCCEEEEEEHHHHHHHCCCH
PYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNLKTTTV
HHHHHHHHHHHEEEECCCCCCCHHEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
GQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKN
CCCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEEEECHHHHCCEEEEEEEEEEEECC
QEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAM
CHHHHHHHHHHCCEEEEEEECHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHH
IKYYLERIKND
HHHHHHHHCCC
>Mature Secondary Structure
MKKYDVIVIGAGHAGLEAAFATSNLNLQTALITLDEKGIGMMPCNPSIGGPAKGIVTREI
CCCEEEEEEECCCCCCEEEEEECCCEEEEEEEEECCCCCEEECCCCCCCCCCCCEEEEEH
DALGGIQGKAADATTMQMKILNSSKGPGVAIRAQIDKIAYQRFKQQIKQQKNLDLIIAEV
HHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEHH
SDLLVENNIVKGVVLSDQKIIQADYVIITTGTYLKSITHRGSVCVDEGADGTKNAKFLSD
HHHHHHCCCEEEEEECCCEEEEECEEEEECCHHHHHHHCCCCEEEECCCCCCCCHHHHHH
ALVKLGFELIRLKTGTPARIKKDSIDFTNMILEPGTNQKIAFSHYHPVYKPYDEQLPCHI
HHHHCCEEEEEEECCCCCCEECCCCCHHHEEECCCCCCEEEEECCCCCCCCCCCCCCEEE
IYTNEQTHQIIRENLNKSAMYGGMISGIGPRYCPSIEDKIVKFSEKPRHQIFVEPESYEL
EEECCHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCC
DSMYLGGFSTSMPIDVQEKMIRSLPGLENCEILKYAYAIEYDAIDPTQLYPSLESKLVNN
CCEEECCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHC
LFFAGQINGTSGYEEAAAQGLMAAINVNQKYQNKEPVILGRDQAYIGVMIDDIVTKGVVE
EEEEEEECCCCCHHHHHHCCEEEEEECCHHCCCCCCEEEECCCEEEEEEHHHHHHHCCCH
PYRLLTSRAEHRLALRNDNADDRLMKIGFEIGLLKPEVYDQYLNNLKQIKEILNLKTTTV
HHHHHHHHHHHEEEECCCCCCCHHEEECCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCC
GQIDDLKFTTLKTNSYLIDYLKRPEIKLNDLLIYCPIKIEDEQIINKVQIQVKFEGYIKN
CCCCCCEEEEEECCHHHHHHHCCCCEEECCEEEEEEEEECHHHHCCEEEEEEEEEEEECC
QEENLKQLKRLNNIKLHAIVDYKEVPNISLETIDKLNKIKPLDLEQASRISGVNLTDIAM
CHHHHHHHHHHCCEEEEEEECHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHH
IKYYLERIKND
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA