Definition | Ureaplasma parvum serovar 3 str. ATCC 27815 chromosome, complete genome. |
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Accession | NC_010503 |
Length | 751,679 |
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The map label for this gene is recG [H]
Identifier: 170762241
GI number: 170762241
Start: 40361
End: 41749
Strand: Direct
Name: recG [H]
Synonym: UPA3_0037
Alternate gene names: 170762241
Gene position: 40361-41749 (Clockwise)
Preceding gene: 170762402
Following gene: 170762033
Centisome position: 5.37
GC content: 24.98
Gene sequence:
>1389_bases TTGAATTTAAAACAATATTTAGGTGAAACTAATTTTTATGATAAGAAAGAAAAATTAGAAAAGAAAAAAATAAAATCATG ACTAAAAAGTGTTTGTACATTTGCTAATGGTCAAGGTGGCAAATTAATATTTGGTGTAAATGAAAACAATAATGTTTTAG GATTAGAAAATTATTTAAATGATTCTGAATTTATTAGTGAAACTATTAAAACAAAAATTGATAATATTCCAGAATTTGAT ATTGAAATTAATGAATACGAAAATAAAATTATTCTAATACTAACAATTTTTCCAGGAAGAAATCCACCATATTTTCTAGT TGATAATGGTTCAAAAACTCCATATAAAAGAGTTGGTAATCAAAGTGTAATTGCTTCAATTAATGATTTATTAAATTGAT GTTTAAGAAGTCAAAATCGCACCTATGATTCATTAGTTTCTAATAAATTACTAAAAGATGTTAGTTTTTTAATGTTAAAA AATGAATATCAAAAACATACAGAAAATTTATGAGAGGATAAATTTTTAAAATCCTTTGAATTAATTGATAACAATAATTA CTTAACAAATGCTGGAGCTTTATTTGCTGATGGATATCAAGTTTATCAATCAGGAGTTTTTTGTACTCGTTGAAATGGAA AGACTAAAACAAATGGTTTAATTGAAGCATTAGATGATGCAGAATTTGAAGGGAATTTACTATTTCTTTTAAATTCAAGT ATAAACTTTATTAAAAGAAATAGTAAAAACATGTGAAGAAAAGGAGTTTTATATCGTATTCAATATCCTGAATATCCTAT AAAAGCAGTGCAAGAAGTAATAGTTAATGCTTTGATTCATCGAGATTATTCAATTATTGGTAGTGAAGTACATATTGACA TGTATGATGATAGATTAGAAGTATATTCTCCTGGTGGTATGTTTGATGGGAATTTTGTCCAAAATATCGACCTTTATAAT GTATGATCAATTCGCCGTAATCCTATTTTAGCTGATTTATTTGCACGAATGAATTTAATGGAAAGAAGAGGTTCTGGTTT AAAAAATATTTTAGAAATTTATGCATCTAAAGAAAATTATCGAGAAGATTTAAAACCGGAGTTTCGTTCAACTGAATCTG CTTTCTTTGTTGTTTTAAAAAATTTAAATTATCAAGAGCAAAATATATCAAAAAATGAAAATCAAAAAATATCCCCTAGC CAAAGACGTAAAAAAATCATAGAATTTATCGGACAAAATCCAAAAACAACAGCTTATGAATTAACAAAAATATTTTTTGT TTCAATTAATACCATTGAACGCGATCTAGCTAAATTAGTACATGATGGATATGTTGAATTTGTGGGATCATCAAAAAATG GTGAATGAAAAATTAAAACTAATCAATAA
Upstream 100 bases:
>100_bases TTTAAACTTTATTAATCACAATAATTTAGTATTTATCCAAAATTTTAATAACAATATTAGTAGTATAATGACTTGTAAAT AATACAAGGAGATTTTGGTG
Downstream 100 bases:
>100_bases ATCACGTTGTTAAAAAATTTTCTCTTCTTTAATCTTGTTATAATTCTTAGTTAGTAATAGTTTAGGTGGTTAAACGTGAA AAAATATGATGTAATTGTCA
Product: AAA domain-contain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 462
Protein sequence:
>462_residues MNLKQYLGETNFYDKKEKLEKKKIKSWLKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISETIKTKIDNIPEFD IEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASINDLLNWCLRSQNRTYDSLVSNKLLKDVSFLMLK NEYQKHTENLWEDKFLKSFELIDNNNYLTNAGALFADGYQVYQSGVFCTRWNGKTKTNGLIEALDDAEFEGNLLFLLNSS INFIKRNSKNMWRKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYDDRLEVYSPGGMFDGNFVQNIDLYN VWSIRRNPILADLFARMNLMERRGSGLKNILEIYASKENYREDLKPEFRSTESAFFVVLKNLNYQEQNISKNENQKISPS QRRKKIIEFIGQNPKTTAYELTKIFFVSINTIERDLAKLVHDGYVEFVGSSKNGEWKIKTNQ
Sequences:
>Translated_462_residues MNLKQYLGETNFYDKKEKLEKKKIKS*LKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISETIKTKIDNIPEFD IEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASINDLLN*CLRSQNRTYDSLVSNKLLKDVSFLMLK NEYQKHTENL*EDKFLKSFELIDNNNYLTNAGALFADGYQVYQSGVFCTR*NGKTKTNGLIEALDDAEFEGNLLFLLNSS INFIKRNSKNM*RKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYDDRLEVYSPGGMFDGNFVQNIDLYN V*SIRRNPILADLFARMNLMERRGSGLKNILEIYASKENYREDLKPEFRSTESAFFVVLKNLNYQEQNISKNENQKISPS QRRKKIIEFIGQNPKTTAYELTKIFFVSINTIERDLAKLVHDGYVEFVGSSKNGE*KIKTNQ >Mature_462_residues MNLKQYLGETNFYDKKEKLEKKKIKS*LKSVCTFANGQGGKLIFGVNENNNVLGLENYLNDSEFISETIKTKIDNIPEFD IEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQSVIASINDLLN*CLRSQNRTYDSLVSNKLLKDVSFLMLK NEYQKHTENL*EDKFLKSFELIDNNNYLTNAGALFADGYQVYQSGVFCTR*NGKTKTNGLIEALDDAEFEGNLLFLLNSS INFIKRNSKNM*RKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYDDRLEVYSPGGMFDGNFVQNIDLYN V*SIRRNPILADLFARMNLMERRGSGLKNILEIYASKENYREDLKPEFRSTESAFFVVLKNLNYQEQNISKNENQKISPS QRRKKIIEFIGQNPKTTAYELTKIFFVSINTIERDLAKLVHDGYVEFVGSSKNGE*KIKTNQ
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG2865
COG function: function code K; Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR014021 - InterPro: IPR016027 - InterPro: IPR004365 [H]
Pfam domain/function: PF00270 DEAD; PF01336 tRNA_anti [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 52319; Mature: 52319
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLKQYLGETNFYDKKEKLEKKKIKSLKSVCTFANGQGGKLIFGVNENNNVLGLENYLND CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHCCH SEFISETIKTKIDNIPEFDIEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQ HHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEECCCCCHHHHCCCH SVIASINDLLNCLRSQNRTYDSLVSNKLLKDVSFLMLKNEYQKHTENLEDKFLKSFELID HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEC NNNYLTNAGALFADGYQVYQSGVFCTRNGKTKTNGLIEALDDAEFEGNLLFLLNSSINFI CCCEEECCCCHHHCCHHHHHCCEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHH KRNSKNMRKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYDDRLEVYSPG HCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCEEEECCC GMFDGNFVQNIDLYNVSIRRNPILADLFARMNLMERRGSGLKNILEIYASKENYREDLKP CCCCCCEEECEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCH EFRSTESAFFVVLKNLNYQEQNISKNENQKISPSQRRKKIIEFIGQNPKTTAYELTKIFF HHCCCCCEEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEEEEE VSINTIERDLAKLVHDGYVEFVGSSKNGEKIKTNQ EEHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCC >Mature Secondary Structure MNLKQYLGETNFYDKKEKLEKKKIKSLKSVCTFANGQGGKLIFGVNENNNVLGLENYLND CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEHHHHCCH SEFISETIKTKIDNIPEFDIEINEYENKIILILTIFPGRNPPYFLVDNGSKTPYKRVGNQ HHHHHHHHHHHHCCCCCCEEEEECCCCEEEEEEEECCCCCCCEEEEECCCCCHHHHCCCH SVIASINDLLNCLRSQNRTYDSLVSNKLLKDVSFLMLKNEYQKHTENLEDKFLKSFELID HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEC NNNYLTNAGALFADGYQVYQSGVFCTRNGKTKTNGLIEALDDAEFEGNLLFLLNSSINFI CCCEEECCCCHHHCCHHHHHCCEEEECCCCCCCCHHHHHHCCCCCCCCEEEEEECCCHHH KRNSKNMRKGVLYRIQYPEYPIKAVQEVIVNALIHRDYSIIGSEVHIDMYDDRLEVYSPG HCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCEEEECCC GMFDGNFVQNIDLYNVSIRRNPILADLFARMNLMERRGSGLKNILEIYASKENYREDLKP CCCCCCEEECEEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHCCH EFRSTESAFFVVLKNLNYQEQNISKNENQKISPSQRRKKIIEFIGQNPKTTAYELTKIFF HHCCCCCEEEEEEECCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHEEEEEEE VSINTIERDLAKLVHDGYVEFVGSSKNGEKIKTNQ EEHHHHHHHHHHHHHCCHHEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9603897 [H]