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The map label for this gene is ydiO [H]

Identifier: 170684026

GI number: 170684026

Start: 1484513

End: 1485667

Strand: Reverse

Name: ydiO [H]

Synonym: EcSMS35_1501

Alternate gene names: 170684026

Gene position: 1485667-1484513 (Counterclockwise)

Preceding gene: 170680395

Following gene: 170682544

Centisome position: 29.31

GC content: 51.43

Gene sequence:

>1155_bases
ATGATGGATTTTTCTTTAACTGAAGAACAAGAACTGCTGCTGGCCAGTATTCGCGAACTGATTACGACTAACTTTCCGGA
AGAGTATTTCCGCACCTGCGATCAAAACGGGACATACCCGCGTGAGTTTATGCGGGCACTGGCGGATAACGGTATTTCCA
TGCTTGGCGTGCCGGAAGAATTTGGTGGTATCCCTGCGGATTACGTCACCCAAATGCTGGCGCTGATGGAAGTGTCAAAA
TGCGGTGCTCCGGCATTTTTGATTACCAACGGTCAATGTATTCACAGTATGCGCCGTTTCGGTTCTGCAGAGCAGCTACG
TAAAACGGCAGAGAGCACACTGGAAACGGGTGATCCCGCCTATGCCCTGGCATTGACGGAGCCAGGCGCAGGCTCAGACA
ACAACAGTGCCACTACCACTTACACGCGTAAAAACGGCAAGGTTTACATCAACGGACAGAAAACCTTTATTACCGGTGCG
AAAGAGTATCCATATATGCTGGTGTTGGCGCGCGATCCGCAACCGAAAGATCCGAAAAAGGCCTTTACTCTGTGGTGGGT
CGACTCCAGTAAACCCGGCATTAAAATCAATCCACTGCATAAAATCGGCTGGCATATGCTCAGCACCTGCGAAGTCTATC
TCGACAACGTGGAAGTTGAAGAGAGCGACATGGTGGGCGAAGAAGGAATGGGTTTCCTCAATGTGATGTACAACTTTGAG
ATGGAGCGCCTGATCAACGCCGCGCGCAGCACCGGCTTTGCCGAATGCGCATTCGAAGATGCCGCCCGCTATGCCAACCA
GCGTATCGCTTTTGGTAAGCCCATTGGTCATAACCAGATGATCCAGGAAAAACTGGCGCTGATGGCGATTAAGATCGACA
ACATGCGCAACATGGTGTTGAAAGTGGCATGGCAAGCCGATCAGCATCAGTCACTGCGCACCAGCGCGGCGCTGGCAAAA
CTGTACTGCGCACGTACCGCAATGGAAGTCATTGATGATGCGATTCAAATCATGGGCGGTCTGGGCTATACCGATGAGGC
GCGCGTGTCCCGCTTCTGGCGTGATGTCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCGG
GTCGGCAGATCCTGAAAGATTATCAGAACAAATAA

Upstream 100 bases:

>100_bases
CCAGTGATTTCGCCAGAACTCAAACTGATGGACGAAAGATTATTTATCGATGCGGCGATGGGTTTTGTCCTGCCTGAAGC
GGCTCATTAACAGGAGTATA

Downstream 100 bases:

>100_bases
TCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCGGCAAGACTTACTGGTTGAGGAAATTCAGATA
GGATTTCTTGTTCCGCAAAA

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 384

Protein sequence:

>384_residues
MMDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEFGGIPADYVTQMLALMEVSK
CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGA
KEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE
MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAK
LYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK

Sequences:

>Translated_384_residues
MMDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEFGGIPADYVTQMLALMEVSK
CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGA
KEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE
MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAK
LYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK
>Mature_384_residues
MMDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEFGGIPADYVTQMLALMEVSK
CGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGA
KEYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE
MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAK
LYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=383, Percent_Identity=30.5483028720627, Blast_Score=176, Evalue=2e-44,
Organism=Homo sapiens, GI4501857, Length=382, Percent_Identity=28.7958115183246, Blast_Score=159, Evalue=4e-39,
Organism=Homo sapiens, GI226958412, Length=384, Percent_Identity=28.3854166666667, Blast_Score=157, Evalue=1e-38,
Organism=Homo sapiens, GI226958414, Length=347, Percent_Identity=29.3948126801153, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI4557231, Length=389, Percent_Identity=29.8200514138817, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI187960098, Length=389, Percent_Identity=29.8200514138817, Blast_Score=153, Evalue=3e-37,
Organism=Homo sapiens, GI4501859, Length=381, Percent_Identity=27.0341207349081, Blast_Score=142, Evalue=6e-34,
Organism=Homo sapiens, GI7656849, Length=355, Percent_Identity=28.169014084507, Blast_Score=130, Evalue=2e-30,
Organism=Homo sapiens, GI21361497, Length=366, Percent_Identity=31.4207650273224, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI76496475, Length=386, Percent_Identity=31.3471502590674, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI4557235, Length=386, Percent_Identity=31.3471502590674, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI38505218, Length=314, Percent_Identity=26.7515923566879, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI48976061, Length=302, Percent_Identity=27.8145695364238, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI211971008, Length=302, Percent_Identity=27.8145695364238, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI4503943, Length=301, Percent_Identity=27.5747508305648, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI7669494, Length=276, Percent_Identity=27.8985507246377, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87081958, Length=383, Percent_Identity=100, Blast_Score=805, Evalue=0.0,
Organism=Escherichia coli, GI1786223, Length=382, Percent_Identity=47.9057591623037, Blast_Score=366, Evalue=1e-102,
Organism=Escherichia coli, GI87082384, Length=258, Percent_Identity=26.3565891472868, Blast_Score=74, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17538396, Length=385, Percent_Identity=32.7272727272727, Blast_Score=188, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17569725, Length=355, Percent_Identity=31.830985915493, Blast_Score=153, Evalue=2e-37,
Organism=Caenorhabditis elegans, GI17534899, Length=352, Percent_Identity=29.8295454545455, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17570075, Length=388, Percent_Identity=30.1546391752577, Blast_Score=150, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17505929, Length=345, Percent_Identity=29.8550724637681, Blast_Score=148, Evalue=5e-36,
Organism=Caenorhabditis elegans, GI17551932, Length=381, Percent_Identity=28.0839895013123, Blast_Score=145, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI17508101, Length=383, Percent_Identity=25.8485639686684, Blast_Score=138, Evalue=6e-33,
Organism=Caenorhabditis elegans, GI17506239, Length=384, Percent_Identity=26.3020833333333, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17533517, Length=352, Percent_Identity=26.9886363636364, Blast_Score=122, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI71985184, Length=352, Percent_Identity=28.125, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI71990804, Length=280, Percent_Identity=27.8571428571429, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32563615, Length=231, Percent_Identity=28.5714285714286, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17534353, Length=289, Percent_Identity=27.3356401384083, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71982178, Length=275, Percent_Identity=25.0909090909091, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562446, Length=304, Percent_Identity=26.6447368421053, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71985192, Length=299, Percent_Identity=26.7558528428094, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531909, Length=247, Percent_Identity=25.1012145748988, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI21356377, Length=382, Percent_Identity=32.4607329842932, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24646207, Length=380, Percent_Identity=31.3157894736842, Blast_Score=175, Evalue=5e-44,
Organism=Drosophila melanogaster, GI21355753, Length=347, Percent_Identity=31.1239193083574, Blast_Score=154, Evalue=7e-38,
Organism=Drosophila melanogaster, GI24660351, Length=385, Percent_Identity=31.9480519480519, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI24666513, Length=380, Percent_Identity=27.8947368421053, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI281363737, Length=342, Percent_Identity=30.9941520467836, Blast_Score=126, Evalue=3e-29,
Organism=Drosophila melanogaster, GI19920834, Length=281, Percent_Identity=28.1138790035587, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 43134; Mature: 43134

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCHH
FGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPA
HCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
YALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKK
EEEEEECCCCCCCCCCCEEEEEECCCEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCC
AFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE
EEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHH
MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVL
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHEEHHHHHHHHH
KVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCER
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
IGGGTDEIMIYVAGRQILKDYQNK
CCCCCCEEEEEECCHHHHHHHCCC
>Mature Secondary Structure
MMDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEE
CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCEEEECCHH
FGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSAEQLRKTAESTLETGDPA
HCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCCHHHHHHHHHHHHCCCCCE
YALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKK
EEEEEECCCCCCCCCCCEEEEEECCCEEEECCCEEEEECCCCCCEEEEEECCCCCCCCCC
AFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE
EEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCHHHHHHHHH
MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVL
HHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHEEHHHHHHHHH
KVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCER
HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
IGGGTDEIMIYVAGRQILKDYQNK
CCCCCCEEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]