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The map label for this gene is ydiR [H]

Identifier: 170682887

GI number: 170682887

Start: 1481521

End: 1482459

Strand: Reverse

Name: ydiR [H]

Synonym: EcSMS35_1497

Alternate gene names: 170682887

Gene position: 1482459-1481521 (Counterclockwise)

Preceding gene: 170682544

Following gene: 170684211

Centisome position: 29.25

GC content: 53.46

Gene sequence:

>939_bases
ATGAGTCAATTAAACAGCGTCTGGGTCTTTAGCGATAATCCTGAACGTTATGCTGAACTGTTTGGCGGCGCTCAGCAATG
GGGCCAACAGGTGTATGCCATTGTACAAAATACCGAGCAGGCGCAGGCAGTTATGCCTTATGGGCCAAAATGCATTTATG
TTCTTGAGCAAAACGACGCGCTGCAACGTACTGAAAATTACGCCGAAAGCATTGCTGCCCTGCTGAAAGATAAACACCCC
GCTATGTTGCTGTTGGCCGCGACGAAACGTGGTAAAGCTCTGGCAGCACGGTTAAGTGTGCAACTGAATGCGGCGCTGGT
GAACGATGCCACGGCGGTGGATATTGTCGATGGTCACATTTGCGCCGAACACCGGATGTATGGCGGGTTAGCGTTCGCAC
AGGAAAAGATCAACAGCCCGCTGGCGATCATTACCCTTGCACCCGGTGTTCAGGAACCGTGCACCCGTGATACCTCTCAT
CAGTGCCCGACAGAAACGGTACCTTATGTTGCCCCGCGTCATGAAATTCTCTGTCGCGAACGCCGTGCGAAAGCGGCAAG
CAGCGTGGACCTGAGCAAAGCAAAACGTGTGGTTGGCGTCGGTCGTGGTCTGGCGGCGCAGGATGACCTGAAAATGGTCC
ACGAACTGGCGGCAGTGCTGAATGCTGAAGTCGGCTGTTCACGTCCAATTGCCGAAGGCGAGAACTGGATGGAGCGTGAA
CGTTATATCGGTGTCTCCGGCGTGTTGCTGAAATCCGATCTCTACCTGACGCTGGGGATCTCCGGGCAGATCCAGCATAT
GGTTGGCGGCAACGGCGCAAAAGTGATTGTCGCCATCAATAAAGATAAAAATGCGCCAATCTTCAACTATGCCGACTACG
GTCTGGTGGGCGATATCTACAAAGTCGTCCCTGCCCTGATTAGCCAGTTGAGTCGCTAA

Upstream 100 bases:

>100_bases
CGTAAGCACATCATTCTCGATAACGATTCGCCGGAGGCCATTGCCGAGCTGGCGGAACATCTGAAGAAAGCCCTGAACTG
AAGTCTACGGAGAAGAAACG

Downstream 100 bases:

>100_bases
TTCCCTTTCAACCACATCTCCCGCTGTAAACGCAGCGGGAAGGGAGCATAACGCATGTCGGATGACAAATTTGATGCCAT
TGTGGTCGGTGCGGGCGTTG

Product: electron transfer flavoprotein subunit YdiR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTEQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHP
AMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTRDTSH
QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR

Sequences:

>Translated_312_residues
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTEQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHP
AMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTRDTSH
QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR
>Mature_311_residues
SQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTEQAQAVMPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHPA
MLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTRDTSHQ
CPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERER
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR

Specific function: May play a role in a redox process [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI189181759, Length=226, Percent_Identity=30.9734513274336, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI4503607, Length=226, Percent_Identity=30.9734513274336, Blast_Score=112, Evalue=3e-25,
Organism=Escherichia coli, GI1787990, Length=312, Percent_Identity=98.7179487179487, Blast_Score=636, Evalue=0.0,
Organism=Escherichia coli, GI1786226, Length=314, Percent_Identity=43.9490445859873, Blast_Score=275, Evalue=3e-75,
Organism=Escherichia coli, GI87082157, Length=237, Percent_Identity=29.957805907173, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17506929, Length=326, Percent_Identity=29.4478527607362, Blast_Score=121, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6325261, Length=125, Percent_Identity=43.2, Blast_Score=100, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17136898, Length=231, Percent_Identity=30.7359307359307, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI24652801, Length=231, Percent_Identity=30.7359307359307, Blast_Score=104, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 33911; Mature: 33780

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTEQAQAVMPYGPKCIYVLEQNDA
CCCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHCEECCCCCEEEEEEECCCH
LQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHEEEEEEEEEEEEEECCCCEEEEECCCH
CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTRDTSHQCPTETVPYVAPRHEILCRE
HHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
HHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY
HHCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHH
KVVPALISQLSR
HHHHHHHHHHCC
>Mature Secondary Structure 
SQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTEQAQAVMPYGPKCIYVLEQNDA
CCCCCEEEECCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHCEECCCCCEEEEEEECCCH
LQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHI
HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHEEEEEEEEEEEEEECCCCEEEEECCCH
CAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTRDTSHQCPTETVPYVAPRHEILCRE
HHHHHHHCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
RRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERE
HHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
RYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIY
HHCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHH
KVVPALISQLSR
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]