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The map label for this gene is ynjC [H]

Identifier: 170682828

GI number: 170682828

Start: 1420352

End: 1421887

Strand: Reverse

Name: ynjC [H]

Synonym: EcSMS35_1435

Alternate gene names: 170682828

Gene position: 1421887-1420352 (Counterclockwise)

Preceding gene: 170681072

Following gene: 170682394

Centisome position: 28.05

GC content: 56.45

Gene sequence:

>1536_bases
ATGGCTACACCGTTACGGTACGCATTAATCTTTTTGCTGTGGGCGATGGTGGCGGTGATTTATGCACCGCTGATCCCGGC
AACTCTCACGCTGATATCGCCTGCTTTGTCGTTGACACACTGGCAGGCGTTATTTGCCGATCCACAGTTACCGCAGGCAT
TACTGGCAACGCTGGTGTCGACAACCATCGCGGCGGTCGGGGCGTTGTTGATTGCCTTGCTGGTGATTGTGGCGCTGTGG
CCTGGGCCGAAATGGCAGCGTATGTGCGCCCGTCTGCCGTGGCTGCTCGCCATTCCCCATGTGGCTTTTGCCTCCAGCGC
CCTTCTGCTCTTTGCTGACGGAGGGCTGCTTTATGACTATTTCCCATATTTCACTCCGCCAATGGACAAATTGGGTATTG
GGCTGGGCCTCACCCTGGCGGTGAAAGAAAGCGCATTTCTGCTGTGGATCTTAGCGGCAGTATTGAGCGAAAAACGGCTG
TTGCAGCAACTCATTGTGCTGGATTCGCTGGGCTACAGCCGCTGGCAATGCCTGAACTGGCTGTTGTTGCCCTCCGTCGC
ACCTGCACTGGCAATGGCGATGCTGGCGATTGTCGCCTGGTCGCTGTCGGTCGTGGATGTGGCGATTATTCTTGGGCCAG
GTAATCCCCCGACGCTGGCGGTAATTAGCTGGCAGTGGTTAACTCAGGGCGACGCCGATCAACAAACGAAAGGCGCACTC
GCCAGCCTGCTGCTGCTGCTGTTACTCGCCGCCTACGTTTTGCTGGGCTATCTGCTATGGCGTAACTGGCGGCGTACTAT
TCCCCGCGTAGATGGCGTTCGTAAGCCTGCCACACCTTTACTACCAGGCATTACGCTGGCGATTTTTTTACCCTTGACCG
GTGTGCTGTGTGTGGTTCTGCTGGCGATCCTCGCGGATCAGTCGACGATCAATAGTGAAGCGCTCATCAACAGCCTGACA
ATGGGGCTGGTGGCGACATTCATCGCTTTGCTCCTGTTACTGCTGTGGCTGGAATGGGGGCTACAACGCCGCCGGTTGTG
GCTATGGTTGCCCATTTTATTACCCGCTCTGCCACTGGTGGCGGGCCAGTACACGCTGGCGCTATGGCTGAACCTGGATG
GAAGCTGGACGGCGGTGGTCTGGGGGCATCTGCTGTGGGTAGTGCCGTGGATGCTGTTTATCCTGCAACCCGCCTGGCAG
CGCATTGATTCACGGTTAATTTTGATTGCGCAAACACTGGGCTGGTCGCGGTCCAAAATCTTCTTTTACGTGAAATGTCC
GCTTATGCTACGCCCTACGCTGATTGCCTTCGCGGTGGGATTTTCAGTCAGTATTGCGCAGTTTATGCCGACGCTGTGGC
TGGGCGCGGGGCGTTTTCCGACGCTCACCACTGAGGCGGTGGCATTAAGCAGCGGCGGCAGCAACGGTATTCTTGCCGCC
CAGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTATGTCAG
ACAAGGACTCCGCTAA

Upstream 100 bases:

>100_bases
CTGACGGGCAGCGCGAAACATTGCAATCGAGAATGCCGCAGGATCTGCCGCCGGTACTGGCTGAACCGCACGCAGGTTGG
GTAAATGCGCTGGAACAAGA

Downstream 100 bases:

>100_bases
TGCTCTGCGTGAAAGATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGGT
GACATTGTCACGTTAATGGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MATPLRYALIFLLWAMVAVIYAPLIPATLTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALW
PGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRL
LQQLIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGAL
ASLLLLLLLAAYVLLGYLLWRNWRRTIPRVDGVRKPATPLLPGITLAIFLPLTGVLCVVLLAILADQSTINSEALINSLT
MGLVATFIALLLLLLWLEWGLQRRRLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVVPWMLFILQPAWQ
RIDSRLILIAQTLGWSRSKIFFYVKCPLMLRPTLIAFAVGFSVSIAQFMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
QALWQLLLPLIIFALTALVAKWVGYVRQGLR

Sequences:

>Translated_511_residues
MATPLRYALIFLLWAMVAVIYAPLIPATLTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALW
PGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRL
LQQLIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGAL
ASLLLLLLLAAYVLLGYLLWRNWRRTIPRVDGVRKPATPLLPGITLAIFLPLTGVLCVVLLAILADQSTINSEALINSLT
MGLVATFIALLLLLLWLEWGLQRRRLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVVPWMLFILQPAWQ
RIDSRLILIAQTLGWSRSKIFFYVKCPLMLRPTLIAFAVGFSVSIAQFMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
QALWQLLLPLIIFALTALVAKWVGYVRQGLR
>Mature_510_residues
ATPLRYALIFLLWAMVAVIYAPLIPATLTLISPALSLTHWQALFADPQLPQALLATLVSTTIAAVGALLIALLVIVALWP
GPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDYFPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLL
QQLIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGALA
SLLLLLLLAAYVLLGYLLWRNWRRTIPRVDGVRKPATPLLPGITLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTM
GLVATFIALLLLLLWLEWGLQRRRLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVVPWMLFILQPAWQR
IDSRLILIAQTLGWSRSKIFFYVKCPLMLRPTLIAFAVGFSVSIAQFMPTLWLGAGRFPTLTTEAVALSSGGSNGILAAQ
ALWQLLLPLIIFALTALVAKWVGYVRQGLR

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=511, Percent_Identity=96.0861056751468, Blast_Score=839, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 56164; Mature: 56032

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPLRYALIFLLWAMVAVIYAPLIPATLTLISPALSLTHWQALFADPQLPQALLATLVS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHC
FPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLNW
CCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHH
ASLLLLLLLAAYVLLGYLLWRNWRRTIPRVDGVRKPATPLLPGITLAIFLPLTGVLCVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGLQRRRLWLWLPILLPALPLV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
AGQYTLALWLNLDGSWTAVVWGHLLWVVPWMLFILQPAWQRIDSRLILIAQTLGWSRSKI
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCEE
FFYVKCPLMLRPTLIAFAVGFSVSIAQFMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCHHHH
QALWQLLLPLIIFALTALVAKWVGYVRQGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATPLRYALIFLLWAMVAVIYAPLIPATLTLISPALSLTHWQALFADPQLPQALLATLVS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
TTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVAFASSALLLFADGGLLYDY
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCEEEEEECCCCHHHC
FPYFTPPMDKLGIGLGLTLAVKESAFLLWILAAVLSEKRLLQQLIVLDSLGYSRWQCLNW
CCCCCCCHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
LLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPTLAVISWQWLTQGDADQQTKGAL
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHH
ASLLLLLLLAAYVLLGYLLWRNWRRTIPRVDGVRKPATPLLPGITLAIFLPLTGVLCVVL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LAILADQSTINSEALINSLTMGLVATFIALLLLLLWLEWGLQRRRLWLWLPILLPALPLV
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
AGQYTLALWLNLDGSWTAVVWGHLLWVVPWMLFILQPAWQRIDSRLILIAQTLGWSRSKI
CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHCCCCCCEE
FFYVKCPLMLRPTLIAFAVGFSVSIAQFMPTLWLGAGRFPTLTTEAVALSSGGSNGILAA
EEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCHHHH
QALWQLLLPLIIFALTALVAKWVGYVRQGLR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]