BacMap

Definition	Escherichia coli SMS-3-5 chromosome, complete genome.
Accession	NC_010498
Length	5,068,389

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The map label for this gene is ynjD [H]

Identifier: 170682394

GI number: 170682394

Start: 1419699

End: 1420352

Strand: Reverse

Name: ynjD [H]

Synonym: EcSMS35_1434

Alternate gene names: 170682394

Gene position: 1420352-1419699 (Counterclockwise)

Preceding gene: 170682828

Following gene: 170684124

Centisome position: 28.02

GC content: 51.83

Gene sequence:

>654_bases
ATGCTCTGCGTGAAAGATGTTTCGCTACGTTTACCAGAAAGCCGCTTGCTGACAAACGTTAACTTTACGGTGGATAAAGG
TGACATTGTCACGTTAATGGGGCCGTCTGGCTGTGGAAAATCCACTCTGTTTTCATGGATGATTGGTGCGCTGGCCGGAC
AGTTTTCTTGTACAGGGGAGCTATGGCTTAATGAGCAACGGATTGACATGCTACCCACCGCACAGCGTCAGATTGGCATT
CTTTTCCAGGATGCACTGTTATTTGATCAGTTCAGCGTCGGGCAAAATTTACTGCTGGCGCTACCGGCGACACTTAAGGG
TAATGCCCGACGTAATGCCGTGAATGATGCACTTGAGCGTTCAGGCCTTGACGGAGCTTTCCATCAGGATCCTGCCACTT
TGTCTGGCGGTCAGCGAGCGCGCGTTGCTCTGCTACGCGCCCTTCTCGCTCAGCCAAAAGCGTTGCTACTGGATGAGCCA
TTCAGCCGTCTTGATGTGGCCCTGCGCGATAATTTTCGCCATTGGGTGTTCAGCGAAGTTCGCGCCCAGGCGATCCCCGT
CGTTCAGGTAACGCACGATCTCCAGGATGTTCCTGCTGATAGTTCTGTTCTGGATATGGCGCAGTGGTCAGAAAATTACA
ACAAACTGCGATAA

Upstream 100 bases:

>100_bases
CCGCCCAGGCTTTATGGCAACTGCTATTACCGCTTATTATTTTTGCCCTGACCGCGTTAGTCGCAAAATGGGTAGGTTAT
GTCAGACAAGGACTCCGCTA

Downstream 100 bases:

>100_bases
CGCAAAGTTTTTCTCAATGCGTCAGTTCAGAATGGCGCACTCAAAACTACAATGTCGGGATTTTCGATGAAACGTGTTTC
TCAAATGACCGCGCTGGCAA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLCVKDVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Sequences:

>Translated_217_residues
MLCVKDVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
>Mature_217_residues
MLCVKDVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGI
LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP
FSRLDVALRDNFRHWVFSEVRAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=176, Percent_Identity=31.8181818181818, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI46592956, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592978, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27262624, Length=192, Percent_Identity=31.7708333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI27262626, Length=192, Percent_Identity=31.7708333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592898, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592971, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592915, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI46592964, Length=174, Percent_Identity=29.8850574712644, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27881501, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI30795238, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI116734710, Length=156, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=97.2350230414747, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1790467, Length=176, Percent_Identity=36.9318181818182, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786253, Length=177, Percent_Identity=38.4180790960452, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI87081709, Length=196, Percent_Identity=34.6938775510204, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI87082267, Length=184, Percent_Identity=33.1521739130435, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI87081791, Length=179, Percent_Identity=36.3128491620112, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786563, Length=181, Percent_Identity=35.3591160220994, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=32, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787029, Length=223, Percent_Identity=30.4932735426009, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786703, Length=189, Percent_Identity=34.3915343915344, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787370, Length=184, Percent_Identity=32.0652173913043, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1787712, Length=192, Percent_Identity=32.8125, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1789593, Length=201, Percent_Identity=30.3482587064677, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI87081834, Length=201, Percent_Identity=32.3383084577114, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786872, Length=200, Percent_Identity=36, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786698, Length=210, Percent_Identity=31.9047619047619, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789873, Length=184, Percent_Identity=34.2391304347826, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1789672, Length=171, Percent_Identity=34.5029239766082, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1790544, Length=182, Percent_Identity=32.967032967033, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1789032, Length=184, Percent_Identity=30.4347826086957, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788225, Length=225, Percent_Identity=28, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788897, Length=208, Percent_Identity=29.3269230769231, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994943, Length=207, Percent_Identity=28.5024154589372, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788450, Length=201, Percent_Identity=31.8407960199005, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=32.2916666666667, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789962, Length=194, Percent_Identity=32.4742268041237, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1786398, Length=185, Percent_Identity=34.0540540540541, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787112, Length=213, Percent_Identity=30.9859154929577, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1790739, Length=190, Percent_Identity=33.1578947368421, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787089, Length=190, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=33.6683417085427, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1790162, Length=207, Percent_Identity=29.4685990338164, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1787105, Length=220, Percent_Identity=28.1818181818182, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1789586, Length=201, Percent_Identity=30.8457711442786, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=26.8518518518519, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI145693107, Length=193, Percent_Identity=32.1243523316062, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994883, Length=211, Percent_Identity=29.8578199052133, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789891, Length=190, Percent_Identity=32.1052631578947, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081782, Length=190, Percent_Identity=30, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1787500, Length=186, Percent_Identity=27.4193548387097, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789963, Length=194, Percent_Identity=28.3505154639175, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787792, Length=202, Percent_Identity=26.2376237623762, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788210, Length=215, Percent_Identity=28.3720930232558, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48995001, Length=205, Percent_Identity=29.2682926829268, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787758, Length=213, Percent_Identity=25.8215962441315, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790525, Length=192, Percent_Identity=27.6041666666667, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1786803, Length=184, Percent_Identity=28.2608695652174, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI48994997, Length=206, Percent_Identity=28.6407766990291, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786345, Length=201, Percent_Identity=30.3482587064677, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786653, Length=203, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=160, Percent_Identity=32.5, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787547, Length=184, Percent_Identity=27.7173913043478, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787759, Length=195, Percent_Identity=27.6923076923077, Blast_Score=61, Evalue=5e-11,
Organism=Escherichia coli, GI1786981, Length=182, Percent_Identity=28.5714285714286, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=165, Percent_Identity=35.7575757575758, Blast_Score=84, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211015, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI193211017, Length=165, Percent_Identity=35.7575757575758, Blast_Score=83, Evalue=8e-17,
Organism=Caenorhabditis elegans, GI17541710, Length=166, Percent_Identity=36.144578313253, Blast_Score=81, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17567269, Length=173, Percent_Identity=32.9479768786127, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17567265, Length=174, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71984940, Length=161, Percent_Identity=34.1614906832298, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI193202349, Length=173, Percent_Identity=32.3699421965318, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=164, Percent_Identity=32.9268292682927, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=180, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=173, Percent_Identity=32.9479768786127, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=169, Percent_Identity=30.1775147928994, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=173, Percent_Identity=32.3699421965318, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=230, Percent_Identity=27.3913043478261, Blast_Score=75, Evalue=5e-15,
Organism=Saccharomyces cerevisiae, GI6322640, Length=220, Percent_Identity=27.7272727272727, Blast_Score=67, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6323217, Length=165, Percent_Identity=32.1212121212121, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=178, Percent_Identity=34.8314606741573, Blast_Score=80, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19920532, Length=167, Percent_Identity=32.9341317365269, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24580930, Length=167, Percent_Identity=32.9341317365269, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281363262, Length=162, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24653245, Length=162, Percent_Identity=33.3333333333333, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24585557, Length=187, Percent_Identity=33.6898395721925, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45552437, Length=187, Percent_Identity=33.6898395721925, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17647959, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726357, Length=164, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85725262, Length=185, Percent_Identity=30.2702702702703, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076682, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI161076684, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581617, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24581615, Length=154, Percent_Identity=31.1688311688312, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28574533, Length=157, Percent_Identity=33.1210191082803, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 23974; Mature: 23974

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCVKDVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CCCCCCCHHCCCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRHWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHHHHHHHH
RAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLCVKDVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAGQFSCTGE
CCCCCCCHHCCCHHHHEEECEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCC
LWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALER
EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRHWVFSEV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHCHHHHHHHHH
RAQAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR
HHHHCCCEEEHHHHHHCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]