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The map label for this gene is ypjA [H]

Identifier: 170681171

GI number: 170681171

Start: 1997802

End: 1998128

Strand: Reverse

Name: ypjA [H]

Synonym: EcSMS35_1976

Alternate gene names: 170681171

Gene position: 1998128-1997802 (Counterclockwise)

Preceding gene: 170683308

Following gene: 170681452

Centisome position: 39.42

GC content: 51.68

Gene sequence:

>327_bases
ATGGGGTCGAAATCAGTCGATACCCGCAGTATATATCGTGAACTGGGCGCAACGCTGAGTTACAACATGCGTCTGGGTAA
CGGTATGGAAGTTGAGCCGTGGCTGAAGGCGGCTGTGCGCAAAGAATTTGTCGATGATAACCGGGTGAAAGTGAATAATG
ACGGTAATTTTGTCAATGATTTGTCGGGCAGACGTGGAATATATCAGGCAGGTATTAAAGCCTCATTCAGCAGTTCGTTA
AGCGGGCATCTCGGGGTGGGGTATAGCCATGGTGCCGGTGTGGAATCCCCGTGGAACGCGGTGGCTGGTGCGAACTGGTC
GTTCTGA

Upstream 100 bases:

>100_bases
GCGCTGTCTCTTCAGGATCAATCCCCTGGTCTGGTGCCTGCGGGCTGATGTTGCAGCAGAGCTAAGGTCACTTAGACGCT
ACTATCATTTATCCAATGGC

Downstream 100 bases:

>100_bases
CCATCAACGATTAAACTGCGCTTCGGCGTAGTTTTCGTTTACAGGGTGTTAAAAGGGAAAATTCTGCGGCAAAAAAAGCC
CGCCAGTTACGGCGGGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 108; Mature: 107

Protein sequence:

>108_residues
MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSL
SGHLGVGYSHGAGVESPWNAVAGANWSF

Sequences:

>Translated_108_residues
MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSL
SGHLGVGYSHGAGVESPWNAVAGANWSF
>Mature_107_residues
GSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVNDLSGRRGIYQAGIKASFSSSLS
GHLGVGYSHGAGVESPWNAVAGANWSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 autotransporter (TC 1.B.12) domain [H]

Homologues:

Organism=Escherichia coli, GI87082145, Length=108, Percent_Identity=94.4444444444444, Blast_Score=215, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005546
- InterPro:   IPR006315
- InterPro:   IPR012332
- InterPro:   IPR011050
- InterPro:   IPR004899
- InterPro:   IPR003991 [H]

Pfam domain/function: PF03797 Autotransporter; PF03212 Pertactin [H]

EC number: NA

Molecular weight: Translated: 11686; Mature: 11555

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVND
CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECC
LSGRRGIYQAGIKASFSSSLSGHLGVGYSHGAGVESPWNAVAGANWSF
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GSKSVDTRSIYRELGATLSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNNDGNFVND
CCCCCHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEECC
LSGRRGIYQAGIKASFSSSLSGHLGVGYSHGAGVESPWNAVAGANWSF
CCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]