Click here to switch to the map view.

The map label for this gene is pleD [H]

Identifier: 170077470

GI number: 170077470

Start: 873736

End: 875286

Strand: Reverse

Name: pleD [H]

Synonym: SYNPCC7002_A0848

Alternate gene names: 170077470

Gene position: 875286-873736 (Counterclockwise)

Preceding gene: 170077471

Following gene: 170077469

Centisome position: 29.1

GC content: 45.45

Gene sequence:

>1551_bases
ATGGATTTTCTCCGACTGCTACACAGTCGATGGCTGCGATGGTTCGGCCTCAATATCTGCTTGGCGATCGCCTATGCCTG
GACCGCGGAAATCAGTCTAATTTTTACCACCCTGCCGGGAACCGTCGCTTCAGTATGGCTTCCTTCGGGATTGACATTGG
GTTTAATTCTTCTTTTTGGCAATAAAATCTTACCGAGTATTGCCCTAGGTTCCCTTTGGGTTATTTCTTTTGATTTGATC
GAACGGGATCCAAATATTAGTATTCAGGCTTTCTTTTGGGTCAACTTTGGTTGCATTGCTGGCAATTTAGTACAACCTCT
GTTAGCCCGTTTTATCCTGAAAAAATATTCCCAGAGCCGACATTTTTTTAATCAAGTTCGGGGCGTTTTAACCTACATCA
CGGCTGCAACCCTTTCGCCAATGGCCTCTGCATTTATTGGTGTCACCAGTATTGTGTTTGCAGAACGTATGGAATGGGGA
CAGTATGGCTTAAATTGGTTTACTTGGTGGCTGGCGAGCACTTTAGCTCACTTGATTTTCACCCCGGTAATTCTCCTGGG
GAAGGACTTTTTTAGCCGAAAAATCCCCTACCATGTCATCGAGATGTTGCTGATTTTAGCTGTTTTCATCAGTGTGAGCT
GGAGTATTTTTATTCAAAGTTATCCCGTTGCTTACCTATTGCTGCTGATTTTAAATTGGACAGTGTTTCGCTACGGTGCT
TTTGTGTCAAGCCTATTGGTCAGCATTGTTTCTATCTTGGCTATTTATACAACTGCCCATGGTTTGGGTGTCTTTGTTTT
AGAGTCCCAAAATCAATCTTTATTGTTTTTACAGTCCTTTATGGGGGTATTTGCCCTCAGTTCTCTGCTCCTCTCAGCGG
TCGTGGAAGAACGGAGCCGCGCCCAAACTTCCCTAAAGAAAGCTCTGGATAATTCCACAAAGCTCATTTTAGAAAGAACA
AAAGAATTACGTCGTAGTGAAGCACTCCTCCGGCAGACCAACCAAGAATTACAAAAATTAGTCCATTTAGACGGTTTAAC
TCAAATTGCCAACCGACGTTGTTTTAATCAACGGCTCACGGCGGAGTGGCATCGTCTCTACCGCGAGCAAAAACCCCTCG
CTTTAATTCTTTTTGATGTGGACTACTTCAAGCGCTACAACGATTCCTATGGTCACCAACAGGGAGATGAATGTCTGATT
CAAATTGCCCAAGCAGTGAAACACCTCCTCAAACGACCGGCAGATTTGGTGGCCCGCTATGGGGGAGAGGAGTTTGTGGT
TGTCTTACCGAATACGACTCAGGAAGGCGCAACCATCGTCGCCAAGCGGATTCGACGAACTGTTTTAGAGCTTCAGATTG
CCCACAATGCAACGGAGATAAATGAGGCAATTGTTACCGTCAGCCTTGGTGTTGTCAGTGGTATCCCCCAGAGCCAGGAA
AAACCCCTAACGTTTGTGAAAAAAGCTGACCAAGCCCTCTATTTAGCCAAACAACAGGGGCGTAATCGCATTGTTGTCGC
CGGAGAGTCTGAGTTTCCCCATTTGCCCTAG

Upstream 100 bases:

>100_bases
AGCCCCGATAACCTATTAGAAGACCGATTTTGAGCTGGTAGAAACCAGTTTCTTTTTGCTGTTTAATTCTTGTTAACGTT
CCTCCCCAATTACTGGTACT

Downstream 100 bases:

>100_bases
TCGAAAGGCGCTAGTCCAAAGGCATTAGGTGGCGATCGCCTTGCCTATAATTTGTCAGCCCCTAGGTTTTAAGCCCAGAT
TAACAGCGATTTATCCCTAT

Product: PleD protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MDFLRLLHSRWLRWFGLNICLAIAYAWTAEISLIFTTLPGTVASVWLPSGLTLGLILLFGNKILPSIALGSLWVISFDLI
ERDPNISIQAFFWVNFGCIAGNLVQPLLARFILKKYSQSRHFFNQVRGVLTYITAATLSPMASAFIGVTSIVFAERMEWG
QYGLNWFTWWLASTLAHLIFTPVILLGKDFFSRKIPYHVIEMLLILAVFISVSWSIFIQSYPVAYLLLLILNWTVFRYGA
FVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALSSLLLSAVVEERSRAQTSLKKALDNSTKLILERT
KELRRSEALLRQTNQELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLI
QIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTVSLGVVSGIPQSQE
KPLTFVKKADQALYLAKQQGRNRIVVAGESEFPHLP

Sequences:

>Translated_516_residues
MDFLRLLHSRWLRWFGLNICLAIAYAWTAEISLIFTTLPGTVASVWLPSGLTLGLILLFGNKILPSIALGSLWVISFDLI
ERDPNISIQAFFWVNFGCIAGNLVQPLLARFILKKYSQSRHFFNQVRGVLTYITAATLSPMASAFIGVTSIVFAERMEWG
QYGLNWFTWWLASTLAHLIFTPVILLGKDFFSRKIPYHVIEMLLILAVFISVSWSIFIQSYPVAYLLLLILNWTVFRYGA
FVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALSSLLLSAVVEERSRAQTSLKKALDNSTKLILERT
KELRRSEALLRQTNQELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLI
QIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTVSLGVVSGIPQSQE
KPLTFVKKADQALYLAKQQGRNRIVVAGESEFPHLP
>Mature_516_residues
MDFLRLLHSRWLRWFGLNICLAIAYAWTAEISLIFTTLPGTVASVWLPSGLTLGLILLFGNKILPSIALGSLWVISFDLI
ERDPNISIQAFFWVNFGCIAGNLVQPLLARFILKKYSQSRHFFNQVRGVLTYITAATLSPMASAFIGVTSIVFAERMEWG
QYGLNWFTWWLASTLAHLIFTPVILLGKDFFSRKIPYHVIEMLLILAVFISVSWSIFIQSYPVAYLLLLILNWTVFRYGA
FVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALSSLLLSAVVEERSRAQTSLKKALDNSTKLILERT
KELRRSEALLRQTNQELQKLVHLDGLTQIANRRCFNQRLTAEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLI
QIAQAVKHLLKRPADLVARYGGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTVSLGVVSGIPQSQE
KPLTFVKKADQALYLAKQQGRNRIVVAGESEFPHLP

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=179, Percent_Identity=35.195530726257, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=32.0224719101124, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=180, Percent_Identity=35.5555555555556, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=35.0282485875706, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=35.5029585798817, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=36.8421052631579, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1788085, Length=193, Percent_Identity=31.6062176165803, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787802, Length=165, Percent_Identity=35.1515151515151, Blast_Score=85, Evalue=9e-18,
Organism=Escherichia coli, GI1788381, Length=186, Percent_Identity=32.258064516129, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=28.2485875706215, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787056, Length=164, Percent_Identity=31.7073170731707, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87081974, Length=162, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=178, Percent_Identity=26.9662921348315, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 58423; Mature: 58423

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFLRLLHSRWLRWFGLNICLAIAYAWTAEISLIFTTLPGTVASVWLPSGLTLGLILLFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHC
NKILPSIALGSLWVISFDLIERDPNISIQAFFWVNFGCIAGNLVQPLLARFILKKYSQSR
CHHHHHHHHHHHHHEEHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
HFFNQVRGVLTYITAATLSPMASAFIGVTSIVFAERMEWGQYGLNWFTWWLASTLAHLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPVILLGKDFFSRKIPYHVIEMLLILAVFISVSWSIFIQSYPVAYLLLLILNWTVFRYGA
HHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALSSLLLSAVVEERSR
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTSLKKALDNSTKLILERTKELRRSEALLRQTNQELQKLVHLDGLTQIANRRCFNQRLT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLIQIAQAVKHLLKRPADLVARY
HHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHC
GGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTVSLGVVSGIPQSQE
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEHHHHHCCCCCCC
KPLTFVKKADQALYLAKQQGRNRIVVAGESEFPHLP
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MDFLRLLHSRWLRWFGLNICLAIAYAWTAEISLIFTTLPGTVASVWLPSGLTLGLILLFG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHCCCCHHHHHHHHHC
NKILPSIALGSLWVISFDLIERDPNISIQAFFWVNFGCIAGNLVQPLLARFILKKYSQSR
CHHHHHHHHHHHHHEEHHHHCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
HFFNQVRGVLTYITAATLSPMASAFIGVTSIVFAERMEWGQYGLNWFTWWLASTLAHLIF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPVILLGKDFFSRKIPYHVIEMLLILAVFISVSWSIFIQSYPVAYLLLLILNWTVFRYGA
HHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSSLLVSIVSILAIYTTAHGLGVFVLESQNQSLLFLQSFMGVFALSSLLLSAVVEERSR
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AQTSLKKALDNSTKLILERTKELRRSEALLRQTNQELQKLVHLDGLTQIANRRCFNQRLT
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEWHRLYREQKPLALILFDVDYFKRYNDSYGHQQGDECLIQIAQAVKHLLKRPADLVARY
HHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHC
GGEEFVVVLPNTTQEGATIVAKRIRRTVLELQIAHNATEINEAIVTVSLGVVSGIPQSQE
CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEHHHHHCCCCCCC
KPLTFVKKADQALYLAKQQGRNRIVVAGESEFPHLP
CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]