Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
---|---|
Accession | NC_010475 |
Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is hdrB [H]
Identifier: 170077457
GI number: 170077457
Start: 861854
End: 862756
Strand: Direct
Name: hdrB [H]
Synonym: SYNPCC7002_A0835
Alternate gene names: 170077457
Gene position: 861854-862756 (Clockwise)
Preceding gene: 170077455
Following gene: 170077465
Centisome position: 28.65
GC content: 50.61
Gene sequence:
>903_bases TTGGCTGAAATGTTGCGCTATGCTTATTTTCCCGGTTGTGTCGCCCAAGGAGCCTGTCGGGAACTGTACCTCTCCACGGC GGCCCTCACCCAAGCCCTCGACATTGAATTAATCGAACTCAAGCAAGCTGCCTGTTGTGGCTCTGGCACCTACAAAGAAG AATCCCAACTCCTAGAAGATAGCGTCAATGCCCGCAACATCGCGTTGGCTGAATCGCTTAATTTACCCTTACTAACCCAC TGCAGCACCTGCCAAGGGGTAATCGGCCATGTCGATGAACGCCTCAAAGCAGCCAAAGACAATAATCCAGATTATTTTTC CCAGGTCAATCAACTCCTGAGTGCATCCCACTGTTCACCCTACAGAGGCACTAGCGAAGTCAAACATCTACTCTGGGCGC TCGTGGGAGATTATGGCCTTGATAAGCTCACCCAAAAAGTAATTAAGCCTCTCCGAGGACTCAAATGTGCCGCCTTTTAT GGCTGTTATCTCCTCCGGGTTCAAAATAGTCTTCCCTTTGATGACCCTGTCCAGCCCCATTCTCTGGAGTCTGTTTTCTC GGCGGTTGGGGCAACGCCAATTATCTATGATGGTCGCACCCAATGCTGTGGTTGGCCCCTCTCTAGTTATGCCACAGAAC AAGCGTTTCGTCTCGCAGGGAAACATCTACAAGCGGCGATCGCCGCCGGAGCTGATTGCCTAGTGACCCCCTGTCCCCTC TGTCATCTCAATTTAGACTCGCGCCAACCAGAAGTCGAAAAAGTCATTGGCCAGAAATTGGGAATTCCTGTGCTCCATTT GCCCCAATTAGTGGCTCTTGCATTGGGTATTTCTCCTAAGGAACTCGGCCTCGGCAAACATATTGTTTCCACGAAGCCGC TCCTCGAAAAATTGGGTTTTTAA
Upstream 100 bases:
>100_bases AAAGCAGAAAGACCATTAGACATAACAAAACATAACTATTTTCACAGACTACGAAACGAGCAACGATAAGATGAACCTAC ATCCTCCAAGATCCTAAGGT
Downstream 100 bases:
>100_bases GAAAAGAGTCAAATGTTTATTCGTAGTGACTCCACATCCGCAAAATTTTAATCATTCTCTCGGATTCTAAAACTTGGTAA ACCAGACGATGTTGAATATT
Product: heterodisulfide reductase, subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MAEMLRYAYFPGCVAQGACRELYLSTAALTQALDIELIELKQAACCGSGTYKEESQLLEDSVNARNIALAESLNLPLLTH CSTCQGVIGHVDERLKAAKDNNPDYFSQVNQLLSASHCSPYRGTSEVKHLLWALVGDYGLDKLTQKVIKPLRGLKCAAFY GCYLLRVQNSLPFDDPVQPHSLESVFSAVGATPIIYDGRTQCCGWPLSSYATEQAFRLAGKHLQAAIAAGADCLVTPCPL CHLNLDSRQPEVEKVIGQKLGIPVLHLPQLVALALGISPKELGLGKHIVSTKPLLEKLGF
Sequences:
>Translated_300_residues MAEMLRYAYFPGCVAQGACRELYLSTAALTQALDIELIELKQAACCGSGTYKEESQLLEDSVNARNIALAESLNLPLLTH CSTCQGVIGHVDERLKAAKDNNPDYFSQVNQLLSASHCSPYRGTSEVKHLLWALVGDYGLDKLTQKVIKPLRGLKCAAFY GCYLLRVQNSLPFDDPVQPHSLESVFSAVGATPIIYDGRTQCCGWPLSSYATEQAFRLAGKHLQAAIAAGADCLVTPCPL CHLNLDSRQPEVEKVIGQKLGIPVLHLPQLVALALGISPKELGLGKHIVSTKPLLEKLGF >Mature_299_residues AEMLRYAYFPGCVAQGACRELYLSTAALTQALDIELIELKQAACCGSGTYKEESQLLEDSVNARNIALAESLNLPLLTHC STCQGVIGHVDERLKAAKDNNPDYFSQVNQLLSASHCSPYRGTSEVKHLLWALVGDYGLDKLTQKVIKPLRGLKCAAFYG CYLLRVQNSLPFDDPVQPHSLESVFSAVGATPIIYDGRTQCCGWPLSSYATEQAFRLAGKHLQAAIAAGADCLVTPCPLC HLNLDSRQPEVEKVIGQKLGIPVLHLPQLVALALGISPKELGLGKHIVSTKPLLEKLGF
Specific function: Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). HdrB may have a function in energy transduction [H]
COG id: COG2048
COG function: function code C; Heterodisulfide reductase, subunit B
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hdrB family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017678 - InterPro: IPR004017 [H]
Pfam domain/function: PF02754 CCG [H]
EC number: =1.8.98.1 [H]
Molecular weight: Translated: 32520; Mature: 32389
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00134 TRYPSIN_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 4.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEMLRYAYFPGCVAQGACRELYLSTAALTQALDIELIELKQAACCGSGTYKEESQLLED CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SVNARNIALAESLNLPLLTHCSTCQGVIGHVDERLKAAKDNNPDYFSQVNQLLSASHCSP CCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC YRGTSEVKHLLWALVGDYGLDKLTQKVIKPLRGLKCAAFYGCYLLRVQNSLPFDDPVQPH CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCH SLESVFSAVGATPIIYDGRTQCCGWPLSSYATEQAFRLAGKHLQAAIAAGADCLVTPCPL HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCE CHLNLDSRQPEVEKVIGQKLGIPVLHLPQLVALALGISPKELGLGKHIVSTKPLLEKLGF EEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure AEMLRYAYFPGCVAQGACRELYLSTAALTQALDIELIELKQAACCGSGTYKEESQLLED HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH SVNARNIALAESLNLPLLTHCSTCQGVIGHVDERLKAAKDNNPDYFSQVNQLLSASHCSP CCCCCCEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCC YRGTSEVKHLLWALVGDYGLDKLTQKVIKPLRGLKCAAFYGCYLLRVQNSLPFDDPVQPH CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCH SLESVFSAVGATPIIYDGRTQCCGWPLSSYATEQAFRLAGKHLQAAIAAGADCLVTPCPL HHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCE CHLNLDSRQPEVEKVIGQKLGIPVLHLPQLVALALGISPKELGLGKHIVSTKPLLEKLGF EEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]