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The map label for this gene is ctpA

Identifier: 170077465

GI number: 170077465

Start: 868639

End: 869883

Strand: Direct

Name: ctpA

Synonym: SYNPCC7002_A0843

Alternate gene names: 170077465

Gene position: 868639-869883 (Clockwise)

Preceding gene: 170077457

Following gene: 170077468

Centisome position: 28.88

GC content: 51.73

Gene sequence:

>1245_bases
ATGCTGAGAAAACGTTTACAGGCTGGTCTTTGCAGTCTTTTGCTGGTGTTGGTATTGGTCTTTGGGCCTATGGAGCGGGC
GATCGCCTTTACCGACGAACAAGATTTACTGCTCCAGGCCTGGCGTTACGTCAGTCAAGCCTACGTCGATGAAACCTTTA
ATCACCAAAATTGGTGGCTCATCCGGCAAAAATTCCTGAAGCGGCCCCTCAAAACCCGCGACGAAGCCTATGAAGCTGTG
GGTGAAATGTTGGCCCTCCTCGATGATCCCTACACGCGTCTATTGCGCCCAGAGCAGTACCGCAGCCTAAAAGTCAGTAC
CTCTGGTGAACTGTCGGGGGTCGGTTTACAGATCAATGTCAATCCAGAAGTCGATGTTTTAGAAGTGATTTTGCCCTTGC
CTGGCTCCCCAGCAGAAGCGGCGGGCATTGAAGCCAAGGATCAAATCTTAGCCATTGATGGCATTGACACCCGCAATATT
GGCCTTGAGGAGGCGGCGGCAAGAATGCGTGGCAAAAAAGGCAGCACCGTTTCTCTCACCGTAAAATCTCCGAAAACAGA
CACGGTACGCACCGTCAAAGTGACCCGCGACACCATTGCCTTAAATCCTGTCTATGACAAATTGGACGAAAAAAATGGCG
AAAAAGTGGGTTACATTCGCCTCAATCAATTCAGTGCCAACGCCAAAACAGAAATTATCAAATCCCTGAATCAGTTGCAA
AAACAGGGGGCTGACCGCTATGTCCTCGACCTGCGCAATAATCCCGGTGGTTTACTCCAGGCTGGCATCGAGATCGCGCG
CCTCTGGCTTGATCAAGAAACCATTGTGTACACGGTCAACCGCCAAGGGATTTTTGAAAGTTACAGTGCTGTGGGCCAAC
CCCTCACCGATGCGCCCCTGGTTGTCCTCGTGAATCAAGCGACCGCTAGCGCCAGTGAAATTTTAGCTGGGGCACTCCAA
GACAATGGCCGGGCGATGCTCGTGGGGGAAAAAACCTTTGGGAAAGGGCTGATTCAATCGCTGTTTGAATTGCCGGATGG
GGCAGGTATGGCCGTTACCGTCGCGAAATATGAAACCCCCCTCCACCATGACATTAACAAGTTAGGGATTATGCCCGATG
AGGTGGTGCCCCAAGAGCCGATCGGCTATGCAATGATGGGGAGTGAGACGGATCTGCAATATCAAGCCGCCCTCGATCTA
TTGACCCAAGACCAGGCGATCGCCCAAATTTCCCAAGCTTCCTAA

Upstream 100 bases:

>100_bases
GGACGGCGATCGCCCCAGGATAACCTCAAAAACCGTCAAAGGGCTGTTAATTTCGCTATAGTGTTAAAAATAATCAAGTA
TTTTTCATAAAACTCGACGG

Downstream 100 bases:

>100_bases
ACCGTTGAATCGACCACCGAAGGCTCTGCCATTTGCTGTGGTGATGTTTTTAGACCCGCTAATTGTTTTGCCTCCGTCGG
CACAAATAACATCAAAGCCG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLRKRLQAGLCSLLLVLVLVFGPMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWLIRQKFLKRPLKTRDEAYEAV
GEMLALLDDPYTRLLRPEQYRSLKVSTSGELSGVGLQINVNPEVDVLEVILPLPGSPAEAAGIEAKDQILAIDGIDTRNI
GLEEAAARMRGKKGSTVSLTVKSPKTDTVRTVKVTRDTIALNPVYDKLDEKNGEKVGYIRLNQFSANAKTEIIKSLNQLQ
KQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYTVNRQGIFESYSAVGQPLTDAPLVVLVNQATASASEILAGALQ
DNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDL
LTQDQAIAQISQAS

Sequences:

>Translated_414_residues
MLRKRLQAGLCSLLLVLVLVFGPMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWLIRQKFLKRPLKTRDEAYEAV
GEMLALLDDPYTRLLRPEQYRSLKVSTSGELSGVGLQINVNPEVDVLEVILPLPGSPAEAAGIEAKDQILAIDGIDTRNI
GLEEAAARMRGKKGSTVSLTVKSPKTDTVRTVKVTRDTIALNPVYDKLDEKNGEKVGYIRLNQFSANAKTEIIKSLNQLQ
KQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYTVNRQGIFESYSAVGQPLTDAPLVVLVNQATASASEILAGALQ
DNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDL
LTQDQAIAQISQAS
>Mature_414_residues
MLRKRLQAGLCSLLLVLVLVFGPMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWLIRQKFLKRPLKTRDEAYEAV
GEMLALLDDPYTRLLRPEQYRSLKVSTSGELSGVGLQINVNPEVDVLEVILPLPGSPAEAAGIEAKDQILAIDGIDTRNI
GLEEAAARMRGKKGSTVSLTVKSPKTDTVRTVKVTRDTIALNPVYDKLDEKNGEKVGYIRLNQFSANAKTEIIKSLNQLQ
KQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYTVNRQGIFESYSAVGQPLTDAPLVVLVNQATASASEILAGALQ
DNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETPLHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDL
LTQDQAIAQISQAS

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain

Homologues:

Organism=Escherichia coli, GI1788134, Length=310, Percent_Identity=30, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CTPA_SYNP2 (P42784)

Other databases:

- EMBL:   CP000951
- EMBL:   X63049
- RefSeq:   YP_001734103.1
- ProteinModelPortal:   P42784
- SMR:   P42784
- GeneID:   6057642
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0843
- HOGENOM:   HBG750030
- OMA:   QSFRIGS
- GO:   GO:0006508
- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447
- SMART:   SM00228
- SMART:   SM00245
- TIGRFAMs:   TIGR00225

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41; SSF50156 PDZ

EC number: =3.4.21.102

Molecular weight: Translated: 45576; Mature: 45576

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: PS50106 PDZ

Important sites: ACT_SITE 310-310 ACT_SITE 321-321 ACT_SITE 335-335

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRKRLQAGLCSLLLVLVLVFGPMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWL
CCHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IRQKFLKRPLKTRDEAYEAVGEMLALLDDPYTRLLRPEQYRSLKVSTSGELSGVGLQINV
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHCEEEEECCCCEEEEEEEEEC
NPEVDVLEVILPLPGSPAEAAGIEAKDQILAIDGIDTRNIGLEEAAARMRGKKGSTVSLT
CCCCEEEEEEECCCCCCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
VKSPKTDTVRTVKVTRDTIALNPVYDKLDEKNGEKVGYIRLNQFSANAKTEIIKSLNQLQ
EECCCCCCEEEEEEECCEEEECHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
KQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYTVNRQGIFESYSAVGQPLTDAPL
HCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCE
VVLVNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETP
EEEEECCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
LHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDLLTQDQAIAQISQAS
HHHCHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHHCCC
>Mature Secondary Structure
MLRKRLQAGLCSLLLVLVLVFGPMERAIAFTDEQDLLLQAWRYVSQAYVDETFNHQNWWL
CCHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
IRQKFLKRPLKTRDEAYEAVGEMLALLDDPYTRLLRPEQYRSLKVSTSGELSGVGLQINV
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCHHHCEEEEECCCCEEEEEEEEEC
NPEVDVLEVILPLPGSPAEAAGIEAKDQILAIDGIDTRNIGLEEAAARMRGKKGSTVSLT
CCCCEEEEEEECCCCCCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCEEEEE
VKSPKTDTVRTVKVTRDTIALNPVYDKLDEKNGEKVGYIRLNQFSANAKTEIIKSLNQLQ
EECCCCCCEEEEEEECCEEEECHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHHHHH
KQGADRYVLDLRNNPGGLLQAGIEIARLWLDQETIVYTVNRQGIFESYSAVGQPLTDAPL
HCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCCE
VVLVNQATASASEILAGALQDNGRAMLVGEKTFGKGLIQSLFELPDGAGMAVTVAKYETP
EEEEECCCCCHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
LHHDINKLGIMPDEVVPQEPIGYAMMGSETDLQYQAALDLLTQDQAIAQISQAS
HHHCHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1421151