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The map label for this gene is atpH

Identifier: 170077358

GI number: 170077358

Start: 766297

End: 766854

Strand: Reverse

Name: atpH

Synonym: SYNPCC7002_A0735

Alternate gene names: 170077358

Gene position: 766854-766297 (Counterclockwise)

Preceding gene: 170077359

Following gene: 170077357

Centisome position: 25.49

GC content: 48.92

Gene sequence:

>558_bases
ATGAAAGGCAACACAATGATTGCTCAGGTCGTTGAGCCCTATGCTGGTGCCCTGATGACCCTTGCGCAAGAGACCAATAA
AGTCGAGGCATTTGCAGAAAATTGTCGGGCTTTACTGTCACTCTTCCAAGAGTCTGCGGAGTTCCGGTCTTTTGTGATGA
ATCCTTTGGTCAAAGCAGAGGATAAAAAAGGTGTTCTCCAAGGGGTTTGTGGCCAGGATGTAGATACCTACTTCCTCAAC
TTTTTGTTTTTGCTTGTGGATCGTCGGCGTATTGTTTTCCTCGAAGGCATTTGTCAGGAATTCGTCGCCCTCCAGCGGAA
ACTGAACAATATTGTTCTCGCTGATGTCACGAGTGCGCAACCGTTGACCACTGACCAAGAAGCAGCGATCGCCGATCAAG
TCAAACAAATGACCGGGGCCAATGCCGTCGAATTGAACATTAGCACCGATGCCGATTTGATTGGTGGTGTCGTGATCAAA
GTCGGTTCCAAGGTCTTTGACGCTAGCTTGCGGGGCCAACTCCGGCGGATCAGCATGGATCTATTAGGCTCAAACTAA

Upstream 100 bases:

>100_bases
TTGCTCTGGCAAAAGTGGAAGCTCAATTGCGGTCTGATTTGGATGAGTCTGCTCAAGCCAAGTTAGTTGATCGCAGCATT
GCACAACTGGGAGGTGGCGC

Downstream 100 bases:

>100_bases
GCTGGTGCCAATTTTTTGGATCTGTTTTAACACCGGCCACTTAACTTTAAAAGTGTCTCAATAGACTGTCTCTAGAATTA
ACCTTATTTAACAGTACAGA

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKGNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAEDKKGVLQGVCGQDVDTYFLN
FLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQPLTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVIK
VGSKVFDASLRGQLRRISMDLLGSN

Sequences:

>Translated_185_residues
MKGNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAEDKKGVLQGVCGQDVDTYFLN
FLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQPLTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVIK
VGSKVFDASLRGQLRRISMDLLGSN
>Mature_185_residues
MKGNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAEDKKGVLQGVCGQDVDTYFLN
FLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQPLTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVIK
VGSKVFDASLRGQLRRISMDLLGSN

Specific function: This protein is part of the stalk that links CF(0) to CF(1). It either transmits conformational changes from CF(0) to CF(1) or is implicated in proton conduction

COG id: COG0712

COG function: function code C; F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase delta chain family

Homologues:

Organism=Escherichia coli, GI1790173, Length=181, Percent_Identity=29.8342541436464, Blast_Score=62, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71984710, Length=166, Percent_Identity=24.6987951807229, Blast_Score=73, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71984717, Length=168, Percent_Identity=25.5952380952381, Blast_Score=73, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPD_SYNP2 (B1XHY9)

Other databases:

- EMBL:   CP000951
- RefSeq:   YP_001733996.1
- ProteinModelPortal:   B1XHY9
- SMR:   B1XHY9
- GeneID:   6057161
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A0735
- HOGENOM:   HBG668108
- OMA:   NANKDFV
- ProtClustDB:   PRK05758
- HAMAP:   MF_01416
- InterPro:   IPR000711
- InterPro:   IPR020781
- Gene3D:   G3DSA:1.10.520.20
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00213 OSCP; SSF47928 ATPsynt_OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 20249; Mature: 20249

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKKGVLQGVCGQDVDTYFLNFLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQ
CCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
PLTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVIKVGSKVFDASLRGQLRRISMD
CCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGSN
HCCCC
>Mature Secondary Structure
MKGNTMIAQVVEPYAGALMTLAQETNKVEAFAENCRALLSLFQESAEFRSFVMNPLVKAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DKKGVLQGVCGQDVDTYFLNFLFLLVDRRRIVFLEGICQEFVALQRKLNNIVLADVTSAQ
CCHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCC
PLTTDQEAAIADQVKQMTGANAVELNISTDADLIGGVVIKVGSKVFDASLRGQLRRISMD
CCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGSN
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA