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The map label for this gene is radC [C]

Identifier: 170026362

GI number: 170026362

Start: 4586422

End: 4587090

Strand: Reverse

Name: radC [C]

Synonym: YPK_4155

Alternate gene names: 170026362

Gene position: 4587090-4586422 (Counterclockwise)

Preceding gene: 170026366

Following gene: 170026361

Centisome position: 97.82

GC content: 45.44

Gene sequence:

>669_bases
ATGGATGAGTGGTATGGGCAGGTGGCCCCAAGAGAGAAATTACTGAAGTATGGTGCTGCGGTACTGACTGATGCTGAACT
ACTCGCTATTTTTTTGCGTACGGGTATTCCTGGGATGCATGTGATGAAGATGGCTGAGTATTTAATTGAGACATTTGGCT
CACTGCATGGGTTGATATCTGCAGATTATCAAACGTTATGTGCCCATAAAGGGATTGGTGCATCCAAATATAGTCAGATT
CAGGCTATCGGTGAGCTGGCCTGTCGTTGTTTTTCATCTCATCTGATGCGGGAAAGTGTTCTGCTTAACCCCGGTATCAC
ACAAAAATTTCTGCAAAATATACTGTCTCACCGTGAACGAGAGATTTTTTTAGTCGTATTTTTGGATAACCAGCATCGTG
TTATTCGCCATGAAGAGATGTTTACTGGTACCATCAGCAGCGTAGAGGTCCATCCGAGAGAAATTGTGCGTGAAGCGCTG
AAGGTTAATGCCGCCGCGCTGATTTTGGCGCATAATCATCCCTCTGGTAAGGCTGAACCGAGCCAAGCTGACCGTTTGAT
AACGACGCAGGTGATAAAAGCCTGTTCATTATTAGATATTCGGGTGCTCGATCATTTAGTAGTTGGCCGGGGTGAATGTG
TCTCATTTGCTGAACGAGGATGGCTTTAG

Upstream 100 bases:

>100_bases
AATTTGCGAGACGTCACGCATGCTATCAAGCGTGAGGTCGTGGTGCGTTAAGCCCTATGTCATGCTATTCACGTAGTTCA
GGAATAACAGGAGCTAAGGA

Downstream 100 bases:

>100_bases
AGCAATATTTATTGATCCTTTCGGGATCTTTAGCTGTTCGGGACTTGAGCACTTACGCTTCAGAGCGTATACTACGCCAC
CTTTGAGAATCTTGGGTTTG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLISADYQTLCAHKGIGASKYSQI
QAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHREREIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREAL
KVNAAALILAHNHPSGKAEPSQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL

Sequences:

>Translated_222_residues
MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLISADYQTLCAHKGIGASKYSQI
QAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHREREIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREAL
KVNAAALILAHNHPSGKAEPSQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL
>Mature_222_residues
MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLISADYQTLCAHKGIGASKYSQI
QAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHREREIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREAL
KVNAAALILAHNHPSGKAEPSQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family. YicR subfamily

Homologues:

Organism=Escherichia coli, GI87082300, Length=213, Percent_Identity=58.2159624413146, Blast_Score=277, Evalue=5e-76,
Organism=Escherichia coli, GI2367100, Length=137, Percent_Identity=48.9051094890511, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788997, Length=104, Percent_Identity=57.6923076923077, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1788312, Length=104, Percent_Identity=57.6923076923077, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y046_YERPS (Q66GD6)

Other databases:

- EMBL:   BX936398
- RefSeq:   YP_068595.1
- ProteinModelPortal:   Q66GD6
- SMR:   Q66GD6
- GeneID:   2956398
- GenomeReviews:   BX936398_GR
- KEGG:   yps:YPTB0046
- HOGENOM:   HBG751042
- OMA:   HAAMAHE
- ProtClustDB:   PRK00024
- BioCyc:   YPSE273123:YPTB0046-MONOMER
- HAMAP:   MF_00018
- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891
- InterPro:   IPR022820
- TIGRFAMs:   TIGR00608

Pfam domain/function: PF04002 DUF2466; SSF47781 RuvA_2_like

EC number: NA

Molecular weight: Translated: 24814; Mature: 24814

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS01302 UPF0758

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADYQTLCAHKGIGASKYSQIQAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHRER
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
EIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREALKVNAAALILAHNHPSGKAEP
EEEEEEEECCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCEEEEEEECCCCCCCCC
SQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MDEWYGQVAPREKLLKYGAAVLTDAELLAIFLRTGIPGMHVMKMAEYLIETFGSLHGLIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
ADYQTLCAHKGIGASKYSQIQAIGELACRCFSSHLMRESVLLNPGITQKFLQNILSHRER
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
EIFLVVFLDNQHRVIRHEEMFTGTISSVEVHPREIVREALKVNAAALILAHNHPSGKAEP
EEEEEEEECCCCCHHHHHHHHHCCCCCCEECHHHHHHHHHHCCCEEEEEEECCCCCCCCC
SQADRLITTQVIKACSLLDIRVLDHLVVGRGECVSFAERGWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA