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The map label for this gene is secB [H]

Identifier: 170026345

GI number: 170026345

Start: 4570545

End: 4571021

Strand: Reverse

Name: secB [H]

Synonym: YPK_4138

Alternate gene names: 170026345

Gene position: 4571021-4570545 (Counterclockwise)

Preceding gene: 170026346

Following gene: 170026344

Centisome position: 97.47

GC content: 48.43

Gene sequence:

>477_bases
ATGTCAGAACAAAACAACACCGAGATGGCTTTCCAGATCCAACGTATCTACACCAAAGATATCTCCTTCGAAGCCCCTAA
TGCTCCGCAGGTTTTTCAGCAGGATTGGCAGCCAGAAGTTAAACTTGATCTAGATACGGCTTCTAGCCAACTGGCGGAAG
ATGTGTATGAAGTGGTACTGCGTGTGACTGTAACGGCCTCTTTGGGTGAAGAAACCGCGTTCCTGTGTGAAGTTCAGCAA
GGTGGTATCTTCTCCGTTGCGGGTATCGAAGGCACTCAACTGGCGCATTGTTTAGGCGCATATTGTCCGAATATTCTGTT
CCCGTATGCGCGCGAATGTATCACCAGCCTGGTCTCTCGCGGTACTTTCCCACAGCTGAATTTGGCACCTGTTAACTTTG
ATGCTCTGTTCATGAATTATCTGCAACAGCAGGCTGAAGGTGAAGTTGAAGGTGTTGAACAACGTCAGGATGCCTGA

Upstream 100 bases:

>100_bases
CCCACTGCTTTAACTCGTCAGTGGGCCCCGATATTAATGGGAAAAGCCCACGACGGAAGAGCTGTTTAATAAGGACGTCT
AACTAAGGGTATCTATACAC

Downstream 100 bases:

>100_bases
TGAACACCAACCCTGCTTCAATGGCTGTTATCGGTGCCGGATCTTACGGCACCGCATTAGCTATCACACTGGCGCGTAAT
GGCCATCAAGTCGTGTTATG

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MSEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDLDTASSQLAEDVYEVVLRVTVTASLGEETAFLCEVQQ
GGIFSVAGIEGTQLAHCLGAYCPNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA

Sequences:

>Translated_158_residues
MSEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDLDTASSQLAEDVYEVVLRVTVTASLGEETAFLCEVQQ
GGIFSVAGIEGTQLAHCLGAYCPNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA
>Mature_157_residues
SEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDLDTASSQLAEDVYEVVLRVTVTASLGEETAFLCEVQQG
GIFSVAGIEGTQLAHCLGAYCPNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=158, Percent_Identity=91.1392405063291, Blast_Score=300, Evalue=3e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 17576; Mature: 17445

Theoretical pI: Translated: 3.82; Mature: 3.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDLDTASSQLAEDVYEVVL
CCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH
RVTVTASLGEETAFLCEVQQGGIFSVAGIEGTQLAHCLGAYCPNILFPYARECITSLVSR
HHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA
CCCCCCEECCCCHHHHHHHHHHHHHCCCHHCHHHHCCC
>Mature Secondary Structure 
SEQNNTEMAFQIQRIYTKDISFEAPNAPQVFQQDWQPEVKLDLDTASSQLAEDVYEVVL
CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHH
RVTVTASLGEETAFLCEVQQGGIFSVAGIEGTQLAHCLGAYCPNILFPYARECITSLVSR
HHHHHHHCCCCCEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GTFPQLNLAPVNFDALFMNYLQQQAEGEVEGVEQRQDA
CCCCCCEECCCCHHHHHHHHHHHHHCCCHHCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA