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The map label for this gene is rarD [H]

Identifier: 170026212

GI number: 170026212

Start: 4412854

End: 4413744

Strand: Direct

Name: rarD [H]

Synonym: YPK_4001

Alternate gene names: 170026212

Gene position: 4412854-4413744 (Clockwise)

Preceding gene: 170026211

Following gene: 170026214

Centisome position: 94.1

GC content: 51.85

Gene sequence:

>891_bases
ATGGATAAACAACAAACTCGTCAGGGCATTTTTTTTGCTCTGGCTGCCTATTTTATTTGGGGCCTTGCTCCCGCGTATTT
CAAACTCATCCAACAAGTGCCCGCTGATGAGATTCTGACCCACAGGGTCATCTGGTCATTCTTCTTTATGTTGATTCTGC
TTACCGTCAGCCGCCATTGGCCACAGGTGCGCGACGCCTGCAAAAACCGTAAGCGCCTATTGTTACTGGCGGTGACCGCC
GTTTTGATTGCCAGTAACTGGCTGCTGTTTATCTGGGCGGTCAACCACAATCACATGCTGGAAGCCAGTCTGGGATATTT
CATTAATCCGTTGGTCAATGTGCTGTTTGGCATGTTATTTCTCGGCGAACGCTTTCGTCGTATGCAATGGGTCGCCGTGG
CACTCGCCTTTGCCGGCGTGCTGATTCAACTGTGGCAATTTGGTTCACTGCCAGTGATTGGGCTGGGTCTGGCCATCACC
TTTGCTTTATACGGCTTGTTGCGTAAAAAGCTGGGCGTTGATGCCCAAACCGGTATGCTCATTGAAACCATGTGGCTGCT
ACCAGTAGCCGCCGTATATCTGTTTTTCATCGCCGACAGCCCGACCAGCCACCTGAGCGCCAATGCCTGGTCGCTGAACC
TGCTGCTAGCCGCTGCGGGCGTCATTACCACAATCCCACTGCTGTTCTTCACCGCGGCGGCCACCCGTTTGCGTCTTTCG
ACACTGGGTTTCTTCCAGTATCTTGGGCCAACATTGATGTTTATTTTGGCGGTGACGTTCTACGGTGAAACCATTGGTAA
TGACAAGATGGTGACCTTCATCTTTATCTGGGCGGCCCTGCTACTGTTTACGCTGGATGCACTCTATACCCAACGCAAAC
TACGCCGGTAA

Upstream 100 bases:

>100_bases
ATCTGGTTGGCTAATTTAACCTACTGCGTGGGTGATTCGCCACGCAAAGTTAAGTACACTAACCGCATCTCCTTTCTTGT
ATTCTGTACCGAGCCACTCC

Downstream 100 bases:

>100_bases
GATGCCGAAAAAAAGCCCGGTTACTCAATATTGGGGTTAGTCCAATTGAGTGACCGGGCTTTTTTATTCGTTGCTGGATA
TTTTTATCAATACAACCCTA

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTA
VLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAIT
FALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAAAGVITTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR

Sequences:

>Translated_296_residues
MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTA
VLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAIT
FALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAAAGVITTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR
>Mature_296_residues
MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVSRHWPQVRDACKNRKRLLLLAVTA
VLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLFLGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAIT
FALYGLLRKKLGVDAQTGMLIETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAAAGVITTIPLLFFTAAATRLRLS
TLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=71.9594594594595, Blast_Score=449, Evalue=1e-128,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33563; Mature: 33563

Theoretical pI: Translated: 10.56; Mature: 10.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVSRHW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAITFALYGLLRKKLGVDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAAAGVITTIPLLFFTAAATRLRLS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKQQTRQGIFFALAAYFIWGLAPAYFKLIQQVPADEILTHRVIWSFFFMLILLTVSRHW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC
PQVRDACKNRKRLLLLAVTAVLIASNWLLFIWAVNHNHMLEASLGYFINPLVNVLFGMLF
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
LGERFRRMQWVAVALAFAGVLIQLWQFGSLPVIGLGLAITFALYGLLRKKLGVDAQTGML
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
IETMWLLPVAAVYLFFIADSPTSHLSANAWSLNLLLAAAGVITTIPLLFFTAAATRLRLS
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGFFQYLGPTLMFILAVTFYGETIGNDKMVTFIFIWAALLLFTLDALYTQRKLRR
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1379743; 9278503 [H]