Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
---|---|
Accession | NC_010465 |
Length | 4,689,441 |
Click here to switch to the map view.
The map label for this gene is yigI [H]
Identifier: 170026211
GI number: 170026211
Start: 4412297
End: 4412767
Strand: Direct
Name: yigI [H]
Synonym: YPK_4000
Alternate gene names: 170026211
Gene position: 4412297-4412767 (Clockwise)
Preceding gene: 170026207
Following gene: 170026212
Centisome position: 94.09
GC content: 48.41
Gene sequence:
>471_bases ATGTCAGTAACGCCCTTAACACTGGAAGACGCTCGCCGCATGATCGGCGAAACCTTTGTTTATCACATGCCATTCAACCG TGAATTAGGGCTAAAATTAGTCCGTTTTGAACAAGATTATGCCGAAATCACCTTCGATAATGATGACAAGTTGGTGGGTA ATATCGCGCAAAAGATCTTGCACGGTGGGGTCATTGCCGCCGTATTGGATGTTGCCGCGGGTCTGGTTTGTGTTGGCAAT AGCCTGATACGCCATGAACCACTGATTCAAGAGCAACTGCAAATAAAGCTGGCTAAAATGGGCACTATCGATCTACGCGT CGACTATCTGCGCCCTGGCCGTGGTGAGCATTTTATCGCCAGAAGCAGTATCTTACGCAGTGGAAACAAAGTGGCTGTCG CCCGGGTTGAACTGCATAATGAAAAACAAATTCATATCGCCAGCGCGACGGCGACCTATCTGGTTGGCTAA
Upstream 100 bases:
>100_bases TACAAGCATAAAATAAACAATTAATTAACGTATAATGTGATTGCTTCTGATCGATAACGGCTGTTTCTAAGCGATAACTA AGAGAAGAGAATAGAACATA
Downstream 100 bases:
>100_bases TTTAACCTACTGCGTGGGTGATTCGCCACGCAAAGTTAAGTACACTAACCGCATCTCCTTTCTTGTATTCTGTACCGAGC CACTCCATGGATAAACAACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 156; Mature: 155
Protein sequence:
>156_residues MSVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEITFDNDDKLVGNIAQKILHGGVIAAVLDVAAGLVCVGN SLIRHEPLIQEQLQIKLAKMGTIDLRVDYLRPGRGEHFIARSSILRSGNKVAVARVELHNEKQIHIASATATYLVG
Sequences:
>Translated_156_residues MSVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEITFDNDDKLVGNIAQKILHGGVIAAVLDVAAGLVCVGN SLIRHEPLIQEQLQIKLAKMGTIDLRVDYLRPGRGEHFIARSSILRSGNKVAVARVELHNEKQIHIASATATYLVG >Mature_155_residues SVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEITFDNDDKLVGNIAQKILHGGVIAAVLDVAAGLVCVGNS LIRHEPLIQEQLQIKLAKMGTIDLRVDYLRPGRGEHFIARSSILRSGNKVAVARVELHNEKQIHIASATATYLVG
Specific function: Unknown
COG id: COG2050
COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082336, Length=151, Percent_Identity=66.887417218543, Blast_Score=223, Evalue=3e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003736 - InterPro: IPR006683 [H]
Pfam domain/function: PF03061 4HBT [H]
EC number: NA
Molecular weight: Translated: 17332; Mature: 17201
Theoretical pI: Translated: 7.77; Mature: 7.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEITFDNDDKLVGNIAQKIL CCCCCCCHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHH HGGVIAAVLDVAAGLVCVGNSLIRHEPLIQEQLQIKLAKMGTIDLRVDYLRPGRGEHFIA CCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHH RSSILRSGNKVAVARVELHNEKQIHIASATATYLVG HHHHHHCCCEEEEEEEEECCCCEEEEEECCEEEECC >Mature Secondary Structure SVTPLTLEDARRMIGETFVYHMPFNRELGLKLVRFEQDYAEITFDNDDKLVGNIAQKIL CCCCCCHHHHHHHHHHHEEEECCCCCCCCCEEEEEECCCEEEEECCCCHHHHHHHHHHH HGGVIAAVLDVAAGLVCVGNSLIRHEPLIQEQLQIKLAKMGTIDLRVDYLRPGRGEHFIA CCHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHCCEEEEEEEEECCCCCCCHHH RSSILRSGNKVAVARVELHNEKQIHIASATATYLVG HHHHHHCCCEEEEEEEEECCCCEEEEEECCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12471157 [H]