| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170026160
Identifier: 170026160
GI number: 170026160
Start: 4356640
End: 4357485
Strand: Reverse
Name: 170026160
Synonym: YPK_3949
Alternate gene names: NA
Gene position: 4357485-4356640 (Counterclockwise)
Preceding gene: 170026161
Following gene: 170026159
Centisome position: 92.92
GC content: 46.57
Gene sequence:
>846_bases ATGACGATGACGACCTTCTCTCATCCCTCCCTGATCCCACTGGATGGCGGTATTAACTTTCGTGATCTCGGGGGTAACCT TGCCGCTGATGGCCGGCGGATAAAGCCCGGCTTGTTATTTCGTTCCGGTTCGCTTGATCGCTTGAGTACCAACGATTGTG ATTTTCTCAGTCACAGTAACGTTACCCAAATTATTGATTACCGTGATGCCGATGAAGTACAGGCTAAGCCAGATGTTTTA TGGCCGGGTGCCCACTATCACAATATACCGGCCAACCCGCTCAGTAGTGAGGTGAATGCCAATCTGGAAAAATTGACTAA CGAGACATTAGCCACATTTGATGTCCGTGCCTTTATGTTCGAGCTTTATCACCGCTTACCTTTTAATAGCTTGGCTTATC AGCAATTGGTCAATTTATTGCAAAATTGTGCATCAACGGACCCTGTCGCTAGCAGCGTTGTGCATAGTGGCGATGTGGTA CATAGAGGTATTGTACATAGAGGTATTGTACAGCACTGTGCGGTTGGAAAAGACCGCACGGGTGTAGGTGCTGCGTTGGT ACTGTTTGCTTTGGGGGCTGATGAATCTACTGTGCTGGAAGATTATCTGTTGACGGAAACCACCCTGAAGCCTTTTCGTG AGCATATGCTGGCTGAATTGGCACTAAAACTGAATGATCAGGCTCTGGCGCAATTTACATTTGTTCTCTCTGCCAGAGAA GAGTTTATTCAAACTACGCTGCGGAGCATTCATGAGCGTTATGGAAGCAGGGAGCGTTGGTTAAAGCATGAGTTCGGTCT TGGCAGTATTGAGCGTGAAAAACTACAGTCTTATTTTTTAGAGTAA
Upstream 100 bases:
>100_bases GAGGGTTTGTTCTCGGGTCAGTTTACTGGCCCGTTCTTTATTTCATCTGATTATCTGATAAGGTCACAGCTCTTATAACG AACAATAATAAGAGGAAAAT
Downstream 100 bases:
>100_bases CGGGTTATTTTTTATGACATTCGTTTTTTAGCATAATGCGTTACCTCTTGCCTTTTATTTGGTCCAGGCGAAGAGTTGGA GTCGGTACCCCCGTATTTTC
Product: protein tyrosine/serine phosphatase
Products: NA
Alternate protein names: Protein-Tyrosine Phosphatase; Protein Tyrosine Phosphatase; Protein-Tyrosine-Phosphatase; Serine/Tyrosine Protein Phosphatase; Tyrosine Protein Phosphatase; Phosphotyrosine Protein Phosphatase Ptpb; Tyrosine Specific Protein Phosphatase
Number of amino acids: Translated: 281; Mature: 280
Protein sequence:
>281_residues MTMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGSLDRLSTNDCDFLSHSNVTQIIDYRDADEVQAKPDVL WPGAHYHNIPANPLSSEVNANLEKLTNETLATFDVRAFMFELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVV HRGIVHRGIVQHCAVGKDRTGVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLAELALKLNDQALAQFTFVLSARE EFIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQSYFLE
Sequences:
>Translated_281_residues MTMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGSLDRLSTNDCDFLSHSNVTQIIDYRDADEVQAKPDVL WPGAHYHNIPANPLSSEVNANLEKLTNETLATFDVRAFMFELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVV HRGIVHRGIVQHCAVGKDRTGVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLAELALKLNDQALAQFTFVLSARE EFIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQSYFLE >Mature_280_residues TMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGSLDRLSTNDCDFLSHSNVTQIIDYRDADEVQAKPDVLW PGAHYHNIPANPLSSEVNANLEKLTNETLATFDVRAFMFELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVVH RGIVHRGIVQHCAVGKDRTGVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLAELALKLNDQALAQFTFVLSAREE FIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQSYFLE
Specific function: Unknown
COG id: COG2365
COG function: function code T; Protein tyrosine/serine phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31454; Mature: 31323
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGSLDRLSTNDCDFLSHSN CCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC VTQIIDYRDADEVQAKPDVLWPGAHYHNIPANPLSSEVNANLEKLTNETLATFDVRAFMF HHHHHCCCCCHHHCCCCCEECCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHH ELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVVHRGIVHRGIVQHCAVGKDRT HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC GVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLAELALKLNDQALAQFTFVLSARE CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH EFIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQSYFLE HHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCC >Mature Secondary Structure TMTTFSHPSLIPLDGGINFRDLGGNLAADGRRIKPGLLFRSGSLDRLSTNDCDFLSHSN CCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC VTQIIDYRDADEVQAKPDVLWPGAHYHNIPANPLSSEVNANLEKLTNETLATFDVRAFMF HHHHHCCCCCHHHCCCCCEECCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHH ELYHRLPFNSLAYQQLVNLLQNCASTDPVASSVVHSGDVVHRGIVHRGIVQHCAVGKDRT HHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC GVGAALVLFALGADESTVLEDYLLTETTLKPFREHMLAELALKLNDQALAQFTFVLSARE CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH EFIQTTLRSIHERYGSRERWLKHEFGLGSIEREKLQSYFLE HHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA