| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is secD [H]
Identifier: 170025479
GI number: 170025479
Start: 3566079
End: 3567893
Strand: Reverse
Name: secD [H]
Synonym: YPK_3262
Alternate gene names: 170025479
Gene position: 3567893-3566079 (Counterclockwise)
Preceding gene: 170025480
Following gene: 170025478
Centisome position: 76.08
GC content: 48.87
Gene sequence:
>1815_bases ATGCTGATCGTTGTGATCTTCGTCGGTCTGCTATATGCGCTTCCCAACCTTTATGGTGAGGATCCGGCTGTTCAAATCAC TGGTGCGCGAGGAATCGCCGCCAGTGAGACAACGCTGGTCCAAGTCCGTGACGTTTTAGAAAAAGACAATATAGCGAGCA AGTCTATTGCGCTGGAAAACGGTGCAATCCTGGCTCGCTTTAGAGATCCTGATGTCCAGCTACGTGCTCGCGAAGCACTG GTGGAGGCGTTGGGTGATAAATATGTTATCGCGCTGAACCTGGCTCCGGCAACACCTTCCTGGCTTGCCAAATTGGGTGC AGAACCCATGAAATTAGGTCTTGACCTGCGAGGTGGTGTTCATTTCCTGATGGAAGTGGATATGGATACCGCGCTGGGCA AACTGCAAGAGCAAACGATGGATACCTTACGCACTGATTTGCGTGAGAAAAATATCCCGTATGCCACAGTACGTAAGCTC GATAACTATGGTGTTGAAGTGCGTTTTCGCGATGATAAAGCGCGCAATGATGCTATCAGCTACCTCTCTTCGCGCCATCG TGATTTGGTGTTCAGCTCCAATGGCAGCAACACGCTAAAAGCGGTGATGAGTGATGAGCGTTTGCGGGAAGCTCGGGAAT ATGCGGTTCAACAAAATATTACAATTCTGCGTAACCGAGTTAACCAGCTAGGTGTTGCAGAGCCGTTAGTCCAACGGCAG GGTTCTGACCGTATTGTTGTTGAACTACCGGGTATTCAAGACACCGCGCGTGCTAAAGAGATTCTGGGTGCGACTGCAAC GTTGGAATTCCGTTTAGTCAACACTAACGTTGATGCTTCTGTCGCAGCTTCTGGCCGTGTACCTGGCGATTCGGAAGTGA AAAATACCCGTGAAGGCCGCCCGGTTGTCTTGTACAAACGAGTGATCTTGACCGGTGACCATATTACTGATTCAACCTCC AGTACCGACGAGTATAACCAGGCTCAGGTTAATATCTCGCTCGATAGTGCAGGGGGGTCGACGATGTCTAATTTTACTAA AGACAATATCGGCAAGCCGATGGCGACTTTATTCGTAGAATATAAAGACAGCGGTAAAAAAGATGCGAATGGCCGGTCTA TTCTGGTTAAACAAGAAGAAGTTATCAATGTGGCGACCATCCAGTCGCGTTTAGGTAACAGTTTCCGCATTACCGGCATT GATAACCCAGCTGAAGCGCGGCAACTTTCCCTGTTACTGCGTGCTGGTGCGTTGATTGCACCTATCCAGATTGTGGAAGA GCGTACTATTGGGCCAACGTTGGGTTCCCAGAATATTGCGCAAGGCTTAGAAGCCTGCTTATGGGGTCTGGCTGTATCGA TCCTGTTTATGGTGGTTTACTACCGTAAGTTTGGTGTGATTGCCAGTACTGCACTGATGGCCAACCTGGTGTTAATCGTC GGCGTGATGTCCTTATTACCGGGGGCGACATTAACCATGCCGGGTATTGCCGGGATTGTATTGACGCTAGCGGTAGCAGT AGATGCTAACGTACTGATTAACGAGCGAATAAAAGAAGAGTATAGAAACGGGCGGACGATCCAGCAAGCGATTCATGAAG GGTACAAGGGTGCCTTCTCAAGTATCGTCGATGCGAACATAACGACGCTTATCACAGCCATTATTCTTTATGCTGTGGGT ACTGGTTCGATTAAAGGCTTTGCTATTACAACGGCAATTGGTGTTGTAACGTCAATGTTCACCGCAATAGTCGGTACTCG TGCCATCGTCAACCTGCTTTACGGCGGCAAGCGCATTAACAAGCTGTCTATTTGA
Upstream 100 bases:
>100_bases GGCTGCCGTGTTACCGAAAGGTACAATGAAGGCTCTGTAATTTTCGATTTTCCCGAAGGGAACTACCGTGTTAAACCGTT ATCCTTTGTGGAAGTATCTG
Downstream 100 bases:
>100_bases GGAGTACGTTGTGGCACAGGATTATACTGTTGAACAACTAAACTATGGCCGTAAAGTCTATGACTTTATGCGCTGGGATT ACGTTGCTTTCGGCGTTTCA
Product: preprotein translocase subunit SecD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 604; Mature: 604
Protein sequence:
>604_residues MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRDPDVQLRAREAL VEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKL DNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTS STDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGI DNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVG TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI
Sequences:
>Translated_604_residues MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRDPDVQLRAREAL VEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKL DNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTS STDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGI DNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVG TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI >Mature_604_residues MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRDPDVQLRAREAL VEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKL DNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTS STDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGI DNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVG TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI
Specific function: Involved in protein export [H]
COG id: COG0342
COG function: function code U; Preprotein translocase subunit SecD
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the secD/secF family. SecD subfamily [H]
Homologues:
Organism=Escherichia coli, GI1786609, Length=604, Percent_Identity=83.4437086092715, Blast_Score=1031, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005791 - InterPro: IPR022813 - InterPro: IPR022646 - InterPro: IPR022645 [H]
Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]
EC number: NA
Molecular weight: Translated: 65355; Mature: 65355
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALEN CEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC GAILARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGV CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHHCCCCCCCCE HFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAIS EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH YLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGR CCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEEECCCCCEEEECCCCCCCCHHHHCCCCC PVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVE CEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHCCHHHCCCCHHHEEEE YKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIA ECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHH PIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFS HHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH SIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRIN HHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KLSI CCCC >Mature Secondary Structure MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALEN CEEHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECC GAILARFRDPDVQLRAREALVEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGV CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCHHHCCCCCCCCE HFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAIS EEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCHHHHHH YLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ HHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCC GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGR CCCEEEEEECCCCHHHHHHHHHCCEEEEEEEEEECCCCCEEEECCCCCCCCHHHHCCCCC PVVLYKRVILTGDHITDSTSSTDEYNQAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVE CEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHCCHHHCCCCHHHEEEE YKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIA ECCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCHHH PIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFS HHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH SIVDANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRIN HHHHCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KLSI CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]