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The map label for this gene is secF [H]

Identifier: 170025478

GI number: 170025478

Start: 3565100

End: 3566068

Strand: Reverse

Name: secF [H]

Synonym: YPK_3261

Alternate gene names: 170025478

Gene position: 3566068-3565100 (Counterclockwise)

Preceding gene: 170025479

Following gene: 170025477

Centisome position: 76.04

GC content: 47.68

Gene sequence:

>969_bases
GTGGCACAGGATTATACTGTTGAACAACTAAACTATGGCCGTAAAGTCTATGACTTTATGCGCTGGGATTACGTTGCTTT
CGGCGTTTCACTGTTGTTGTTAGTCGCATCCATTGTGGTGATGTCGACTAAGGGATTCAACTGGGGTCTGGATTTCACCG
GTGGTACGGTGATTGAAATTAATCTGGAAAACCCTGCGGATCTTGACCAACTCCGTGACACGTTGCAAAACGCGGGTTTT
GAATCGCCGATACTGCAAAACTTTGGTAGCTCTCGTGATGTCATGGTACGTATGCCACCTGCAACCGGCACTGCCGGCCA
GGAGCTGGGTAACAAAATCATCTCGGTTATCAATGAATCTGTTGATAAGAATGCATCAGTAAAGCGTATCGAATTCGTTG
GGCCTAGTGTGGGCAGTGATTTAGCCCAAGCCGGTGCTCTGGCGCTTTTGGTCGCGTTACTGTCTATTCTGGTTTACGTG
GGTTTCCGTTTTGAATGGCGTCTGGCATTGGGGGCCGTTATCTCATTGGCCCATGACGTGGTCATTACCATGGGGATCTT
GTCGTTGTTCCATATTGAGATTGACCTGACGATCATTGCTTCATTGATGTCGGTTATTGGTTACTCTCTGAACGATAGTA
TCGTGGTATCAGACCGTATTCGTGAGAACTTCCGCAAAATTCGTCGTGGAACGCCTTACGAAATCATGAACGTATCTCTG
ACACAAACCTTAAGTCGTACGATTATGACTTCTGCGACGACTCTGATGGTTGTGTTGATGCTGTTTATCTTCGGTGGTGC
GATGCTGCAAGGCTTCTCATTAACGATGCTGATCGGTGTTACTATCGGTACCGTTTCATCTATCTACGTGGCGTCCGCGC
TGGCGCTGAAGTTAGGGATGAAACGTGAACACATGTTGCAGCCGAAGGTTGAGAAAGAAGGTGCTGACCAACCTTCAATA
CTGCCGTGA

Upstream 100 bases:

>100_bases
GTAACGTCAATGTTCACCGCAATAGTCGGTACTCGTGCCATCGTCAACCTGCTTTACGGCGGCAAGCGCATTAACAAGCT
GTCTATTTGAGGAGTACGTT

Downstream 100 bases:

>100_bases
TTGTTAAGTAATCATCGTTCGATGTATAAGATAGCCCTGAAACTTGTTGGTTTCAGGGTTTTTTTATCAGCAAATTCCCC
AGCTAAATAGCTACTGCTTT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MAQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLENPADLDQLRDTLQNAGF
ESPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINESVDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYV
GFRFEWRLALGAVISLAHDVVITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSL
TQTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKREHMLQPKVEKEGADQPSI
LP

Sequences:

>Translated_322_residues
MAQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLENPADLDQLRDTLQNAGF
ESPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINESVDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYV
GFRFEWRLALGAVISLAHDVVITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSL
TQTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKREHMLQPKVEKEGADQPSI
LP
>Mature_321_residues
AQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLENPADLDQLRDTLQNAGFE
SPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINESVDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVG
FRFEWRLALGAVISLAHDVVITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSLT
QTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKREHMLQPKVEKEGADQPSIL
P

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=323, Percent_Identity=81.1145510835913, Blast_Score=548, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35179; Mature: 35048

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEI
CCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
NLENPADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINES
ECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
VDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDV
HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHEEHHHH
TQTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KREHMLQPKVEKEGADQPSILP
CHHHHCCCCHHHCCCCCCCCCC
>Mature Secondary Structure 
AQDYTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEI
CCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEEE
NLENPADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGTAGQELGNKIISVINES
ECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
VDKNASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDV
HCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VITMGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPYEIMNVSL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHEEHHHH
TQTLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
KREHMLQPKVEKEGADQPSILP
CHHHHCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]