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The map label for this gene is rfbH [H]

Identifier: 170025406

GI number: 170025406

Start: 3487581

End: 3488894

Strand: Reverse

Name: rfbH [H]

Synonym: YPK_3189

Alternate gene names: 170025406

Gene position: 3488894-3487581 (Counterclockwise)

Preceding gene: 170025407

Following gene: 170025405

Centisome position: 74.4

GC content: 42.54

Gene sequence:

>1314_bases
ATGAGTCAAGAAGAATTACGTCAACAGATTGCTGAGCTGGTTGCTCAGTACGCTGAAACGGCTATGGCCCCTAAGCCATT
TGAAGCAGGTAAGAGTGTCGTTCCACCTTCAGGTAAAGTTATTGGTACCAAAGAACTCCAGTTAATGGTTGAAGCTTCTT
TAGACGGTTGGCTAACAACGGGCCGTTTTAATGACGCTTTTGAGAAAAAACTAGGCGAGTATTTGGGCGTTCCTTATGTT
CTGACTACAACTTCTGGCTCTTCAGCCAACTTATTGGCTTTGACCGCGCTGACCTCACCTAAATTAGGGGTACGGGCGTT
GAAGCCAGGTGACGAAGTTATTACTGTTGCCGCAGGTTTTCCAACCACAGTAAACCCAACTATTCAGAATGGGTTAATTC
CTGTCTTTGTTGATGTTGATATTCCAACTTACAATGTAAATGCTAGCCTGATTGAAGCGGCGGTTAGTGATAAAACCAAA
GCTATTATGATTGCCCATACATTAGGTAATCTATTCGATCTAGCTGAAGTTCGCCGAGTAGCTGATAAATATAACCTGTG
GTTAATTGAAGACTGCTGCGATGCGTTGGGTTCCACCTACGATGGAAAAATGGCTGGTACATTTGGCGATATTGGTACCG
TTAGCTTCTATCCCGCTCATCATATCACCATGGGTGAAGGTGGGGCGGTATTTACACAATCGGCGGAACTGAAGAGTATC
ATCGAATCTTTCCGTGATTGGGGTCGTGATTGTTATTGTGCTCCAGGCTGTGACAACACATGTAAAAAGCGTTTCGGCCA
GCAACTTGGCTCTTTACCATTCGGTTATGATCATAAATATACTTATTCCCATTTAGGCTATAACCTAAAAATCACAGATA
TGCAGGCTGCCTGTGGTTTGGCGCAACTAGAGCGCATAGAAGAGTTTGTTGAAAAACGTAAAGCTAACTTTAAATACCTT
AAAGACGCACTCCAATCTTGCGCTGACTTTCTTGAGTTACCAGAAGCGACTGAAAATTCAGATCCATCATGGTTTGGTTT
CCCTATCACTCTGAAAGAAGATAGCGGAGTTAGCCGCATTGATCTGGTTAAATTCCTTGATGAAGCTAAAGTGGGAACTC
GCCTACTATTTGCCGGTAATTTAACTCGCCAGCCGTATTTCCATGATGTGAAATACCGTGTTGTTGGTGAATTGACAAAC
ACCGATAGAATTATGAATCAAACTTTCTGGATTGGTATTTACCCAGGCCTGACACATGATCATTTGGATTATGTTGTGAG
TAAGCTTGAAGAGTTCTTTGGTTTGAATTTTTAA

Upstream 100 bases:

>100_bases
GCTGGCACAAGAACTGGTTATCAGGCACAGATATGCATGAATACAGTATTACTGAAATTAATAATTACATGAACACTAAA
TGATTTGAGGTCATAGATAA

Downstream 100 bases:

>100_bases
CAGGAGCAAGGAGGCAACACTGCCTCTTTTTTTTATATGAAAATTCTTATTACCGGCGTTAGCGGTTATTTGGGGAGCCA
ATTAGCCAATGCTTTAATGC

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MSQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYV
LTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTK
AIMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSI
IESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYL
KDALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTN
TDRIMNQTFWIGIYPGLTHDHLDYVVSKLEEFFGLNF

Sequences:

>Translated_437_residues
MSQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYV
LTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTK
AIMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSI
IESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYL
KDALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTN
TDRIMNQTFWIGIYPGLTHDHLDYVVSKLEEFFGLNF
>Mature_436_residues
SQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTTGRFNDAFEKKLGEYLGVPYVL
TTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGFPTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKA
IMIAHTLGNLFDLAEVRRVADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSII
ESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLERIEEFVEKRKANFKYLK
DALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRIDLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNT
DRIMNQTFWIGIYPGLTHDHLDYVVSKLEEFFGLNF

Specific function: Unknown

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=404, Percent_Identity=28.4653465346535, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI2367285, Length=350, Percent_Identity=32.2857142857143, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 48284; Mature: 48153

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTT
CCHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEHHHEEEEEEECCCCCEEC
GRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCEEEEEECC
PTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRV
CCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
ADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSI
HHHCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCHHHHHH
IESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHHHH
AQLERIEEFVEKRKANFKYLKDALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHH
DLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHD
HHHHHHHHHHHCEEEEEECCCCCCCCHHCCEEEEEECCCCHHHHHCCEEEEEECCCCCHH
HLDYVVSKLEEFFGLNF
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQEELRQQIAELVAQYAETAMAPKPFEAGKSVVPPSGKVIGTKELQLMVEASLDGWLTT
CHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCEEEHHHEEEEEEECCCCCEEC
GRFNDAFEKKLGEYLGVPYVLTTTSGSSANLLALTALTSPKLGVRALKPGDEVITVAAGF
CCCCHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCCCCCEEECCCCCEEEEEECC
PTTVNPTIQNGLIPVFVDVDIPTYNVNASLIEAAVSDKTKAIMIAHTLGNLFDLAEVRRV
CCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
ADKYNLWLIEDCCDALGSTYDGKMAGTFGDIGTVSFYPAHHITMGEGGAVFTQSAELKSI
HHHCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCHHHHHH
IESFRDWGRDCYCAPGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGL
HHHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEHHHCCEEEEEECHHHHHHH
AQLERIEEFVEKRKANFKYLKDALQSCADFLELPEATENSDPSWFGFPITLKEDSGVSRI
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCHH
DLVKFLDEAKVGTRLLFAGNLTRQPYFHDVKYRVVGELTNTDRIMNQTFWIGIYPGLTHD
HHHHHHHHHHHCEEEEEECCCCCCCCHHCCEEEEEECCCCHHHHHCCEEEEEECCCCCHH
HLDYVVSKLEEFFGLNF
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]