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The map label for this gene is rfbX [H]

Identifier: 170025403

GI number: 170025403

Start: 3483769

End: 3485076

Strand: Reverse

Name: rfbX [H]

Synonym: YPK_3186

Alternate gene names: 170025403

Gene position: 3485076-3483769 (Counterclockwise)

Preceding gene: 170025404

Following gene: 170025402

Centisome position: 74.32

GC content: 31.35

Gene sequence:

>1308_bases
ATGCGTATTCCAACTCATCTTTTAACAGCATTCTCATCGTGGGGTTCAAGAGCTGTATCTTCATTGACCCAAATATTAAG
CATTGGGTATTTGATTGATATTCTTGGAGAACAAAATTATGCCATGTTTGTGTTGTTATCAGGTCTTATTGCTTGGGGAA
CAATTGCAGATTTTGGACTTGGTTATAGTCTTCAGAATTTCATATCAGAACAGCGTTCTGTCAATGCAAACTATAGCGAA
TATATTGTTGCGTCTGTTAGTTTAATGTCGATTGGTTTTATTTTGTTGACTTTTTTATTATGGCCGCTATCTAATCTGAT
TGTGCCATTTTATCTTCAAGGGTTTGATTCGGAGAAAGTACCAGATAAAGCAATATTACTTTATACGTCATTATTTATTT
TTTCTATAACCTACTTTGGTGCAGTGATATATAGAGTATGGTTTGCAGAGAATAAGGGTATACTTGTTAATATTATATCA
GCCTCGATCTCTTTGATTGGATTTTTGTCCCTAATTATAATTAGTAATGCTAACCTTGGTTACAGTTTCTATTTGATAAT
TTTTTCATTTTTAGGGCCAGCGGCTATAATTCCATTTGTTTTATTATTTGGGCGATTTTTTAAAGAGATAAAAAAGTGTC
ATAGAATTAGATCTGATATTATTAAGCCTATTGTCCGTCGTGCCTCTGGTTTTCTAATTTTTTCTATTTTAACTACAATT
ATTATTCAGACTGATTACATAGTAATGTCCCAAGTTTTAAAACCTAGTGAGATAATAACATATAGCGTTTTAATGAAGAT
TTTTGGTATTGTATTCTTTGTCTTCTCTGCGTTGCTTCAGGCACTATGGCCTGTCTGTGTCGAGTATAGAGTCCAAGGTA
AGTGGGTTCAGCTAAATAATCTTATAAAATTATATATTTTATTAGGTGTTATTTTCGTGATAGCTTGTAGTATTGGGTTT
TATATATTTCGGATGGAAATTATCGGGATGATTTCTCATAATTTAGATCCCAATATTAAATGGACTATAATAGCTCTTTT
TTGTGTGTATTATATATTACGAATTTGGTCTGAAACGTTTTCAATGCTTTTACAAAGTATGAATTTTTTACGACCGCTTT
GGTATCTCTTACCAATACAAGCACTCTTAAATTTATTCTTACAATGGAATCTATCAAAGGAATATGGAATGCAAGGAATG
TTAATTGGTGTTATTACATCATTTGCATTAACTACTGTGATATTCCTACCTCTGATTTATAGTAATAGAATCGGTAAAAT
GAAAGTACTTAATAATCCTAGTTATTAG

Upstream 100 bases:

>100_bases
AAATCATTTTTAAAAAATTATTTTTATTTTAATATATTTTGTTGTCGTGTCGCACTCTCTGTTCTGTTAATTGATCTAAT
AAAATAGATAAAAATTCATC

Downstream 100 bases:

>100_bases
TTAGTTTACTATGTTCGCCGGTATAAGAATAATGTGATGTTTTATTTTAATTGGAGTTAACTTTGGAAATAAAAAGATCG
ACGGCGGAAAAAAGCAGTAT

Product: LPS side chain defect: putative O-antigen transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MRIPTHLLTAFSSWGSRAVSSLTQILSIGYLIDILGEQNYAMFVLLSGLIAWGTIADFGLGYSLQNFISEQRSVNANYSE
YIVASVSLMSIGFILLTFLLWPLSNLIVPFYLQGFDSEKVPDKAILLYTSLFIFSITYFGAVIYRVWFAENKGILVNIIS
ASISLIGFLSLIIISNANLGYSFYLIIFSFLGPAAIIPFVLLFGRFFKEIKKCHRIRSDIIKPIVRRASGFLIFSILTTI
IIQTDYIVMSQVLKPSEIITYSVLMKIFGIVFFVFSALLQALWPVCVEYRVQGKWVQLNNLIKLYILLGVIFVIACSIGF
YIFRMEIIGMISHNLDPNIKWTIIALFCVYYILRIWSETFSMLLQSMNFLRPLWYLLPIQALLNLFLQWNLSKEYGMQGM
LIGVITSFALTTVIFLPLIYSNRIGKMKVLNNPSY

Sequences:

>Translated_435_residues
MRIPTHLLTAFSSWGSRAVSSLTQILSIGYLIDILGEQNYAMFVLLSGLIAWGTIADFGLGYSLQNFISEQRSVNANYSE
YIVASVSLMSIGFILLTFLLWPLSNLIVPFYLQGFDSEKVPDKAILLYTSLFIFSITYFGAVIYRVWFAENKGILVNIIS
ASISLIGFLSLIIISNANLGYSFYLIIFSFLGPAAIIPFVLLFGRFFKEIKKCHRIRSDIIKPIVRRASGFLIFSILTTI
IIQTDYIVMSQVLKPSEIITYSVLMKIFGIVFFVFSALLQALWPVCVEYRVQGKWVQLNNLIKLYILLGVIFVIACSIGF
YIFRMEIIGMISHNLDPNIKWTIIALFCVYYILRIWSETFSMLLQSMNFLRPLWYLLPIQALLNLFLQWNLSKEYGMQGM
LIGVITSFALTTVIFLPLIYSNRIGKMKVLNNPSY
>Mature_435_residues
MRIPTHLLTAFSSWGSRAVSSLTQILSIGYLIDILGEQNYAMFVLLSGLIAWGTIADFGLGYSLQNFISEQRSVNANYSE
YIVASVSLMSIGFILLTFLLWPLSNLIVPFYLQGFDSEKVPDKAILLYTSLFIFSITYFGAVIYRVWFAENKGILVNIIS
ASISLIGFLSLIIISNANLGYSFYLIIFSFLGPAAIIPFVLLFGRFFKEIKKCHRIRSDIIKPIVRRASGFLIFSILTTI
IIQTDYIVMSQVLKPSEIITYSVLMKIFGIVFFVFSALLQALWPVCVEYRVQGKWVQLNNLIKLYILLGVIFVIACSIGF
YIFRMEIIGMISHNLDPNIKWTIIALFCVYYILRIWSETFSMLLQSMNFLRPLWYLLPIQALLNLFLQWNLSKEYGMQGM
LIGVITSFALTTVIFLPLIYSNRIGKMKVLNNPSY

Specific function: May be involved in the translocation process of the nascent O-polysaccharide molecules and/or its ligation to lipid A core units [H]

COG id: COG2244

COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002797 [H]

Pfam domain/function: PF01943 Polysacc_synt [H]

EC number: NA

Molecular weight: Translated: 49605; Mature: 49605

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPTHLLTAFSSWGSRAVSSLTQILSIGYLIDILGEQNYAMFVLLSGLIAWGTIADFGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GYSLQNFISEQRSVNANYSEYIVASVSLMSIGFILLTFLLWPLSNLIVPFYLQGFDSEKV
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDKAILLYTSLFIFSITYFGAVIYRVWFAENKGILVNIISASISLIGFLSLIIISNANLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
YSFYLIIFSFLGPAAIIPFVLLFGRFFKEIKKCHRIRSDIIKPIVRRASGFLIFSILTTI
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IIQTDYIVMSQVLKPSEIITYSVLMKIFGIVFFVFSALLQALWPVCVEYRVQGKWVQLNN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
LIKLYILLGVIFVIACSIGFYIFRMEIIGMISHNLDPNIKWTIIALFCVYYILRIWSETF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SMLLQSMNFLRPLWYLLPIQALLNLFLQWNLSKEYGMQGMLIGVITSFALTTVIFLPLIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
SNRIGKMKVLNNPSY
HCCCCCEEECCCCCC
>Mature Secondary Structure
MRIPTHLLTAFSSWGSRAVSSLTQILSIGYLIDILGEQNYAMFVLLSGLIAWGTIADFGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
GYSLQNFISEQRSVNANYSEYIVASVSLMSIGFILLTFLLWPLSNLIVPFYLQGFDSEKV
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDKAILLYTSLFIFSITYFGAVIYRVWFAENKGILVNIISASISLIGFLSLIIISNANLG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC
YSFYLIIFSFLGPAAIIPFVLLFGRFFKEIKKCHRIRSDIIKPIVRRASGFLIFSILTTI
HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IIQTDYIVMSQVLKPSEIITYSVLMKIFGIVFFVFSALLQALWPVCVEYRVQGKWVQLNN
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHH
LIKLYILLGVIFVIACSIGFYIFRMEIIGMISHNLDPNIKWTIIALFCVYYILRIWSETF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SMLLQSMNFLRPLWYLLPIQALLNLFLQWNLSKEYGMQGMLIGVITSFALTTVIFLPLIY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHH
SNRIGKMKVLNNPSY
HCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]