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The map label for this gene is ybjD [C]

Identifier: 170025363

GI number: 170025363

Start: 3435097

End: 3437145

Strand: Direct

Name: ybjD [C]

Synonym: YPK_3144

Alternate gene names: 170025363

Gene position: 3435097-3437145 (Clockwise)

Preceding gene: 170025362

Following gene: 170025364

Centisome position: 73.25

GC content: 49.68

Gene sequence:

>2049_bases
ATGTATCTGAAACACATCAGCGCACGCAACTATCGTGCCTTTGGAGATAGTACATCCACACCTGCACTCGACTGGGAGCT
CAATCCGGGGCTAAACATCCTTGTAGGAGAAAATGATGCAGGGAAGACATGTATCGTTGATGCTATCCGCCAGGTGCTGT
TGACGACCAGTTATGAAAACATCCGTCTCTTTGAGCAAGATTTTCACATTCACGGCGCAATTCGATCTAATACCCTTTGT
ATCGAAGCCACTTTGTGTGGGCTAAGTACTGATCAGGAAGCTTCAGTCCTTGAATGGTTGACACTTGGTGAAGATGGAAC
TTGTTCGCTTATTCTGCATCTTGAGGCACGCTTTCACCCACCCCAAGCAACTAAGCGTTCACGTGTTGAAACAATTGTGC
GAACTGGAGTAAATGGCAGTGGGCCAGAAGTGGGTTACGCGGTAAGAGAGCTGGTGCGAGCAACCTACTTAAGGCCACTA
CGCGATGCTGAGGCGGAGTTAAGTTCAGGGCGCCAATCACGTCTGTCCCAGATTCTTGGGGCCCATAACCTTATTGCTGG
GCAAGAGGTAAACGACTTCGATCAGACAATGCCAGCTAACATTCCTACGCAACTAGTCGGTCTGATGGCGTTCACTCAGC
ACCACCTTGGTCAGCATCAAGTTATCAAAAGTGTAGAGAAGGACATCAACGACAACTACTTGAGCCAATTTGCATTTTCC
GGAGATGCAATTCAGTCGCGCATCCGTATCGCACCTAATCTAGCGCTCACGCCTATTCTTGAGAAATTCGAGCTGTCGCT
ACTTCCCGGAGCACACATTGATCCTGACGCTCGTTGCGCTCGCGGTCTTGGGTATAACAATGCATTGTTTATGGCTACTG
AACTGGTGCTGCTGCGAGATGGCGAAGAACTGGGCCTCCTTCTCGTTGAGGAACCAGAGGCGCATCTCCACCCTCAGTTG
CAAGAGCGCGTGATGGATCTCCTGAAAGAGCACTCTAACGATGATCAGGCGCATAAGCGGGTTCAGGTTATTATGACGAC
GCACAGCCCTTCTTTGGTATCAACTGCACGCATTGAAGATCTAACACTGGTGCACAAGGCACAGACCTTCCCTTTAGCTG
TCGGCAAAACGAAACTAAAGCGTACCGACTACTCTTTCCTTCGCCGTTTTATCGATGCAACCAAAGCGAATCTATTTTTT
GCACGCGGTGTCATGATGGTGGAAGGGCCTGCTGAAGCAATCTTGCTACCAGCTATTGCAGAGATGTGTGGTCGCTCATT
CTCAAAGCACGGTGTATCACTTGTTAACGTTGGAAATACCGGGCTTTACCATTACGCCCGCATTCTCCAGCGAGAAGGTA
CCGGCCCGGATATCCCAATACCGGTCGTATGCCTGACAGACCGGGACATTGTGCCTGACGTAGCAAAAAGCTACGTCTCA
AAACCCGCTCAGGGTAAGCGCTTCGATTCTGATTATGACGCCGATGAAATGAAGCAAGTAGTTCAAAACAAGAAGGACCG
TGCGGAAGGCGGAAAAACGATCGTCTGCGTATCTGATCGTTGGACACTCGAATATGATCTTGCACACTACGGTTGCGCTA
AGCTGATGTACCTCGCTATTTCCCTTGCCGTAAAAGCAAAGTCTCGCGATGAAAGGTTAGAAGAAAGCGACGAAATTGAG
ACACTTGCAGCGGAAGAAAAAAACTGGTTAGCACTGGAGGCTGCGGGTCACTCCGATGAAGCTCTCGCCGCAATTATTTA
TCAGCCTCTTCAAGAGAAAAAAGCTTCGAAAGCCATAGCAGCTCAGTATGCAGCTTATCTGGTTTGTACGGGCGCGTATG
GCACGGATGACGAACTGTTCAATAAACTACCCCCATACGTGCAAACTGCACTATCACACCTGACGATAGACCCAAAATCC
AAATCCTCAGCGGTGACAGGAGTTGTTGCCGGAGCTGCCACATCGACTGGTGCAACTGCGGCGGCAGTAACAACAACCAT
GTCGGCAAGCTCTACCGTTCCGGCTAACGCGGCAACAAACGGTATTTAG

Upstream 100 bases:

>100_bases
CGCTTCCCATTACTTTAACTAACATGAATTTAAAACTTAATGTCGTCATTCCGTTTCATCTACGATGCATCAAATGTGAG
ATTTCTACTAAGGAGAGAAC

Downstream 100 bases:

>100_bases
GAGATCATAAATGAGTGCTGTCCATATCTCTCCAGACGACTTAGCAGAACTGACGACGCTAGCCAGAGATCTGAACTTCG
ACGATGCTGAACGTCGTTCT

Product: SMC (structural maintenance of chromosomes) family protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 682; Mature: 682

Protein sequence:

>682_residues
MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSYENIRLFEQDFHIHGAIRSNTLC
IEATLCGLSTDQEASVLEWLTLGEDGTCSLILHLEARFHPPQATKRSRVETIVRTGVNGSGPEVGYAVRELVRATYLRPL
RDAEAELSSGRQSRLSQILGAHNLIAGQEVNDFDQTMPANIPTQLVGLMAFTQHHLGQHQVIKSVEKDINDNYLSQFAFS
GDAIQSRIRIAPNLALTPILEKFELSLLPGAHIDPDARCARGLGYNNALFMATELVLLRDGEELGLLLVEEPEAHLHPQL
QERVMDLLKEHSNDDQAHKRVQVIMTTHSPSLVSTARIEDLTLVHKAQTFPLAVGKTKLKRTDYSFLRRFIDATKANLFF
ARGVMMVEGPAEAILLPAIAEMCGRSFSKHGVSLVNVGNTGLYHYARILQREGTGPDIPIPVVCLTDRDIVPDVAKSYVS
KPAQGKRFDSDYDADEMKQVVQNKKDRAEGGKTIVCVSDRWTLEYDLAHYGCAKLMYLAISLAVKAKSRDERLEESDEIE
TLAAEEKNWLALEAAGHSDEALAAIIYQPLQEKKASKAIAAQYAAYLVCTGAYGTDDELFNKLPPYVQTALSHLTIDPKS
KSSAVTGVVAGAATSTGATAAAVTTTMSASSTVPANAATNGI

Sequences:

>Translated_682_residues
MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSYENIRLFEQDFHIHGAIRSNTLC
IEATLCGLSTDQEASVLEWLTLGEDGTCSLILHLEARFHPPQATKRSRVETIVRTGVNGSGPEVGYAVRELVRATYLRPL
RDAEAELSSGRQSRLSQILGAHNLIAGQEVNDFDQTMPANIPTQLVGLMAFTQHHLGQHQVIKSVEKDINDNYLSQFAFS
GDAIQSRIRIAPNLALTPILEKFELSLLPGAHIDPDARCARGLGYNNALFMATELVLLRDGEELGLLLVEEPEAHLHPQL
QERVMDLLKEHSNDDQAHKRVQVIMTTHSPSLVSTARIEDLTLVHKAQTFPLAVGKTKLKRTDYSFLRRFIDATKANLFF
ARGVMMVEGPAEAILLPAIAEMCGRSFSKHGVSLVNVGNTGLYHYARILQREGTGPDIPIPVVCLTDRDIVPDVAKSYVS
KPAQGKRFDSDYDADEMKQVVQNKKDRAEGGKTIVCVSDRWTLEYDLAHYGCAKLMYLAISLAVKAKSRDERLEESDEIE
TLAAEEKNWLALEAAGHSDEALAAIIYQPLQEKKASKAIAAQYAAYLVCTGAYGTDDELFNKLPPYVQTALSHLTIDPKS
KSSAVTGVVAGAATSTGATAAAVTTTMSASSTVPANAATNGI
>Mature_682_residues
MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSYENIRLFEQDFHIHGAIRSNTLC
IEATLCGLSTDQEASVLEWLTLGEDGTCSLILHLEARFHPPQATKRSRVETIVRTGVNGSGPEVGYAVRELVRATYLRPL
RDAEAELSSGRQSRLSQILGAHNLIAGQEVNDFDQTMPANIPTQLVGLMAFTQHHLGQHQVIKSVEKDINDNYLSQFAFS
GDAIQSRIRIAPNLALTPILEKFELSLLPGAHIDPDARCARGLGYNNALFMATELVLLRDGEELGLLLVEEPEAHLHPQL
QERVMDLLKEHSNDDQAHKRVQVIMTTHSPSLVSTARIEDLTLVHKAQTFPLAVGKTKLKRTDYSFLRRFIDATKANLFF
ARGVMMVEGPAEAILLPAIAEMCGRSFSKHGVSLVNVGNTGLYHYARILQREGTGPDIPIPVVCLTDRDIVPDVAKSYVS
KPAQGKRFDSDYDADEMKQVVQNKKDRAEGGKTIVCVSDRWTLEYDLAHYGCAKLMYLAISLAVKAKSRDERLEESDEIE
TLAAEEKNWLALEAAGHSDEALAAIIYQPLQEKKASKAIAAQYAAYLVCTGAYGTDDELFNKLPPYVQTALSHLTIDPKS
KSSAVTGVVAGAATSTGATAAAVTTTMSASSTVPANAATNGI

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 74532; Mature: 74532

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSYEN
CCCCCCCCCCCEECCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
IRLFEQDFHIHGAIRSNTLCIEATLCGLSTDQEASVLEWLTLGEDGTCSLILHLEARFHP
EEEEEECCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEEEEECCCC
PQATKRSRVETIVRTGVNGSGPEVGYAVRELVRATYLRPLRDAEAELSSGRQSRLSQILG
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
AHNLIAGQEVNDFDQTMPANIPTQLVGLMAFTQHHLGQHQVIKSVEKDINDNYLSQFAFS
HHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCC
GDAIQSRIRIAPNLALTPILEKFELSLLPGAHIDPDARCARGLGYNNALFMATELVLLRD
CHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHCCCCCCEEHHEEEEEEEEC
GEELGLLLVEEPEAHLHPQLQERVMDLLKEHSNDDQAHKRVQVIMTTHSPSLVSTARIED
CCCCCEEEEECCCHHCCHHHHHHHHHHHHHCCCCHHHHCEEEEEEEECCCCHHHHHHHHH
LTLVHKAQTFPLAVGKTKLKRTDYSFLRRFIDATKANLFFARGVMMVEGPAEAILLPAIA
HHEEECCCCCEEECCCHHHHHCCHHHHHHHHHHHHHHEEEECCEEEEECCHHHHHHHHHH
EMCGRSFSKHGVSLVNVGNTGLYHYARILQREGTGPDIPIPVVCLTDRDIVPDVAKSYVS
HHHCCCHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHC
KPAQGKRFDSDYDADEMKQVVQNKKDRAEGGKTIVCVSDRWTLEYDLAHYGCAKLMYLAI
CCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHH
SLAVKAKSRDERLEESDEIETLAAEEKNWLALEAAGHSDEALAAIIYQPLQEKKASKAIA
HHHHHCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AQYAAYLVCTGAYGTDDELFNKLPPYVQTALSHLTIDPKSKSSAVTGVVAGAATSTGATA
HHHHEEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCCCCH
AAVTTTMSASSTVPANAATNGI
HHHEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MYLKHISARNYRAFGDSTSTPALDWELNPGLNILVGENDAGKTCIVDAIRQVLLTTSYEN
CCCCCCCCCCCEECCCCCCCCEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCC
IRLFEQDFHIHGAIRSNTLCIEATLCGLSTDQEASVLEWLTLGEDGTCSLILHLEARFHP
EEEEEECCEEEEEEECCEEEEEEEEECCCCCCCHHHHHHHCCCCCCCEEEEEEEEECCCC
PQATKRSRVETIVRTGVNGSGPEVGYAVRELVRATYLRPLRDAEAELSSGRQSRLSQILG
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHH
AHNLIAGQEVNDFDQTMPANIPTQLVGLMAFTQHHLGQHQVIKSVEKDINDNYLSQFAFS
HHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHCC
GDAIQSRIRIAPNLALTPILEKFELSLLPGAHIDPDARCARGLGYNNALFMATELVLLRD
CHHHHHHHHCCCCCHHHHHHHHHHHEECCCCCCCCHHHHHHCCCCCCEEHHEEEEEEEEC
GEELGLLLVEEPEAHLHPQLQERVMDLLKEHSNDDQAHKRVQVIMTTHSPSLVSTARIED
CCCCCEEEEECCCHHCCHHHHHHHHHHHHHCCCCHHHHCEEEEEEEECCCCHHHHHHHHH
LTLVHKAQTFPLAVGKTKLKRTDYSFLRRFIDATKANLFFARGVMMVEGPAEAILLPAIA
HHEEECCCCCEEECCCHHHHHCCHHHHHHHHHHHHHHEEEECCEEEEECCHHHHHHHHHH
EMCGRSFSKHGVSLVNVGNTGLYHYARILQREGTGPDIPIPVVCLTDRDIVPDVAKSYVS
HHHCCCHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHC
KPAQGKRFDSDYDADEMKQVVQNKKDRAEGGKTIVCVSDRWTLEYDLAHYGCAKLMYLAI
CCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHH
SLAVKAKSRDERLEESDEIETLAAEEKNWLALEAAGHSDEALAAIIYQPLQEKKASKAIA
HHHHHCCCHHHHCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AQYAAYLVCTGAYGTDDELFNKLPPYVQTALSHLTIDPKSKSSAVTGVVAGAATSTGATA
HHHHEEEEEECCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHEEEECCCCCCCCCH
AAVTTTMSASSTVPANAATNGI
HHHEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA