| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170025364
Identifier: 170025364
GI number: 170025364
Start: 3437156
End: 3439078
Strand: Direct
Name: 170025364
Synonym: YPK_3145
Alternate gene names: NA
Gene position: 3437156-3439078 (Clockwise)
Preceding gene: 170025363
Following gene: 170025365
Centisome position: 73.3
GC content: 47.89
Gene sequence:
>1923_bases ATGAGTGCTGTCCATATCTCTCCAGACGACTTAGCAGAACTGACGACGCTAGCCAGAGATCTGAACTTCGACGATGCTGA ACGTCGTTCTGCCCTACTTGAAAACGGATCGCGTGATTTTAATGCAGTACCCGGTAGTGGGAAGACATCGCTTCTTGCTG CAAAACTTTTGTTGCTGGCTAGGAAATGGCCTTATGCACGCCGAGGCATATGTGTTCTAAGTCACACTAACGTTGCTCGC GATGAGATTGCACATCGCCTCGCGGGAACGGTTGAAGGAGCTCAACTTCTGAGCTACCCCCATTTCATCGGCACTATCCA TAGCTTCGTCAATCATTTTTTTGCAATGCCCTTACTGCGTAGCCTAGGAGAGAAGATTGATGTCATTGATGATCAGGTGT TCGCAGATAAAGCTCGTTCTCTACTGCTGACGAGAAAATTTTCAGGCCTTCGCATTTATCTGGAAAACCAGAGGAATGGT GAAGGTATCGCCACTACGCTCTTCTATCGAACGGCGGCGCTTAGCGTGCATGTTGAAAGTGGCAGCCTGCCCGCATCGCA CACAAAATCATACAATTCATTGATAGAACTGAAAAATATGCTGGCGTGTCAGGGTATTTTTCGGCATCGTGACATGTTTG CATTTGCTGACCTTGCGCTTCAAACCTGCCCAAGGCTTCTTGATGTTGTCCATCGTCGCTTCCCGATGGTTTTCATCGAC GAAATGCAGGATACCTCCTGGGATCAAGAGTCCTTGTTAAATCGTATTTTCGATGGACGGTCAGTGATGCAGCGTTTTGG GGATATCGATCAGAAGATTATCTCTGATGAAGAACAAGCTGAATTACTCACATTCCCACGGGCTGGGTATGGATGTATAA GCACCAGCAAACGGTTCGGTAAATCAATTTCCAATGCTGTAGGGTGTGTCCGTGTCAGTGGCGAGGCTGTTGTTGGTGAG GCCGAAAATGTCCATGCCCCAGTCCTACTCTTGTACAAAACGGATAGTGCAATCAAAGTGGTCGAACGCTTTGGTCAAAT CGTTATTGACCAATTGAGCGAAGACAACATTGGTGTGCGAGAGGTTAAGGCGATGAGCGCTCGCAAAACCGGTGAGAGCA ACGTTGACGCAGGTCGTCATCTTCTTGATTACTGTCCAACCTATGGAGGAGATAAGTTTAGTGCAGGACTACGCTCCGAA AGTTTCTGGAGTCTCATCGGTGACAGTAAAGGGGCTTTGAAAGAAACATCTTTGAGTTCAAGAGTTTCTGACGTTCGCAG AGCGTTATTGATTATTCTGCGTGCATCTGGTGCATCGTGGGCGCAAGACATTCGTGATGCACGAGCACTTCCACGAGCTG CAAAGGCTGTTACACCCACGGGAACTATTGATAAGTTAACACGGCAGCTCGCATTGTCCGGGGAGGCACTTTGTGCAGAT GGTCAGCGAGATGCACTGACAGAACAGCTCTACATGCAACTTAAGCCATACCTTCCAGAAGAGATAAGCCTTGAAATATT TAAGGGACTGAGCACTTTCGAAGACGCTGGCAGGAGGGGGATACTAAACACTGCTTCCTCGGCGAAATGTGAAATTAGTT TTCAGGGGAGAAGCCTCGACATTGGACTCGGTACGGTTGCAGGGATGAAAGGCGAAACTCATGCCGCATCTTTAATCCTT GAATCCTACGGTGGGTCCAGTCGTAAGTTCGATGTTGCACTGGGGCTAGAGTATATTGCAGGAACAGCGGCCAAAAAAAT TTCAAAGCTTCCTAAAACTCAACAGGCGCAAATGCGCAACCTTTACGTAGCAATGTCTCGACCTGCGAAATTGTTATGCC TTGCAGCGAACGAAAGCCGAGTTTCGCAGACTTTGCGTGATGCGCTTGTAGTTAAAGGATGGCATATAGAAGAAGTGACT TGA
Upstream 100 bases:
>100_bases ACATCGACTGGTGCAACTGCGGCGGCAGTAACAACAACCATGTCGGCAAGCTCTACCGTTCCGGCTAACGCGGCAACAAA CGGTATTTAGGAGATCATAA
Downstream 100 bases:
>100_bases AAAAGTACATGTCAGCATGTGATGCATCCATTATCTTGATTAAGAAATGCTCACCTCTCACTCACAGCTACCGTTTTGTA CACGAATGCTGGCAGAGTCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 640; Mature: 639
Protein sequence:
>640_residues MSAVHISPDDLAELTTLARDLNFDDAERRSALLENGSRDFNAVPGSGKTSLLAAKLLLLARKWPYARRGICVLSHTNVAR DEIAHRLAGTVEGAQLLSYPHFIGTIHSFVNHFFAMPLLRSLGEKIDVIDDQVFADKARSLLLTRKFSGLRIYLENQRNG EGIATTLFYRTAALSVHVESGSLPASHTKSYNSLIELKNMLACQGIFRHRDMFAFADLALQTCPRLLDVVHRRFPMVFID EMQDTSWDQESLLNRIFDGRSVMQRFGDIDQKIISDEEQAELLTFPRAGYGCISTSKRFGKSISNAVGCVRVSGEAVVGE AENVHAPVLLLYKTDSAIKVVERFGQIVIDQLSEDNIGVREVKAMSARKTGESNVDAGRHLLDYCPTYGGDKFSAGLRSE SFWSLIGDSKGALKETSLSSRVSDVRRALLIILRASGASWAQDIRDARALPRAAKAVTPTGTIDKLTRQLALSGEALCAD GQRDALTEQLYMQLKPYLPEEISLEIFKGLSTFEDAGRRGILNTASSAKCEISFQGRSLDIGLGTVAGMKGETHAASLIL ESYGGSSRKFDVALGLEYIAGTAAKKISKLPKTQQAQMRNLYVAMSRPAKLLCLAANESRVSQTLRDALVVKGWHIEEVT
Sequences:
>Translated_640_residues MSAVHISPDDLAELTTLARDLNFDDAERRSALLENGSRDFNAVPGSGKTSLLAAKLLLLARKWPYARRGICVLSHTNVAR DEIAHRLAGTVEGAQLLSYPHFIGTIHSFVNHFFAMPLLRSLGEKIDVIDDQVFADKARSLLLTRKFSGLRIYLENQRNG EGIATTLFYRTAALSVHVESGSLPASHTKSYNSLIELKNMLACQGIFRHRDMFAFADLALQTCPRLLDVVHRRFPMVFID EMQDTSWDQESLLNRIFDGRSVMQRFGDIDQKIISDEEQAELLTFPRAGYGCISTSKRFGKSISNAVGCVRVSGEAVVGE AENVHAPVLLLYKTDSAIKVVERFGQIVIDQLSEDNIGVREVKAMSARKTGESNVDAGRHLLDYCPTYGGDKFSAGLRSE SFWSLIGDSKGALKETSLSSRVSDVRRALLIILRASGASWAQDIRDARALPRAAKAVTPTGTIDKLTRQLALSGEALCAD GQRDALTEQLYMQLKPYLPEEISLEIFKGLSTFEDAGRRGILNTASSAKCEISFQGRSLDIGLGTVAGMKGETHAASLIL ESYGGSSRKFDVALGLEYIAGTAAKKISKLPKTQQAQMRNLYVAMSRPAKLLCLAANESRVSQTLRDALVVKGWHIEEVT >Mature_639_residues SAVHISPDDLAELTTLARDLNFDDAERRSALLENGSRDFNAVPGSGKTSLLAAKLLLLARKWPYARRGICVLSHTNVARD EIAHRLAGTVEGAQLLSYPHFIGTIHSFVNHFFAMPLLRSLGEKIDVIDDQVFADKARSLLLTRKFSGLRIYLENQRNGE GIATTLFYRTAALSVHVESGSLPASHTKSYNSLIELKNMLACQGIFRHRDMFAFADLALQTCPRLLDVVHRRFPMVFIDE MQDTSWDQESLLNRIFDGRSVMQRFGDIDQKIISDEEQAELLTFPRAGYGCISTSKRFGKSISNAVGCVRVSGEAVVGEA ENVHAPVLLLYKTDSAIKVVERFGQIVIDQLSEDNIGVREVKAMSARKTGESNVDAGRHLLDYCPTYGGDKFSAGLRSES FWSLIGDSKGALKETSLSSRVSDVRRALLIILRASGASWAQDIRDARALPRAAKAVTPTGTIDKLTRQLALSGEALCADG QRDALTEQLYMQLKPYLPEEISLEIFKGLSTFEDAGRRGILNTASSAKCEISFQGRSLDIGLGTVAGMKGETHAASLILE SYGGSSRKFDVALGLEYIAGTAAKKISKLPKTQQAQMRNLYVAMSRPAKLLCLAANESRVSQTLRDALVVKGWHIEEVT
Specific function: Unknown
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 70280; Mature: 70149
Theoretical pI: Translated: 8.31; Mature: 8.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAVHISPDDLAELTTLARDLNFDDAERRSALLENGSRDFNAVPGSGKTSLLAAKLLLLA CCEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH RKWPYARRGICVLSHTNVARDEIAHRLAGTVEGAQLLSYPHFIGTIHSFVNHFFAMPLLR HCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH SLGEKIDVIDDQVFADKARSLLLTRKFSGLRIYLENQRNGEGIATTLFYRTAALSVHVES HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHEEEEEEEEEEEEC GSLPASHTKSYNSLIELKNMLACQGIFRHRDMFAFADLALQTCPRLLDVVHRRFPMVFID CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE EMQDTSWDQESLLNRIFDGRSVMQRFGDIDQKIISDEEQAELLTFPRAGYGCISTSKRFG CCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHCCCHHHHHEECCCCCCCCCHHHHHHH KSISNAVGCVRVSGEAVVGEAENVHAPVLLLYKTDSAIKVVERFGQIVIDQLSEDNIGVR HHHHHHHCEEEECCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHH EVKAMSARKTGESNVDAGRHLLDYCPTYGGDKFSAGLRSESFWSLIGDSKGALKETSLSS HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHH RVSDVRRALLIILRASGASWAQDIRDARALPRAAKAVTPTGTIDKLTRQLALSGEALCAD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHCCCCEECC GQRDALTEQLYMQLKPYLPEEISLEIFKGLSTFEDAGRRGILNTASSAKCEISFQGRSLD CCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCCEEEEEECCCEEE IGLGTVAGMKGETHAASLILESYGGSSRKFDVALGLEYIAGTAAKKISKLPKTQQAQMRN EECHHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LYVAMSRPAKLLCLAANESRVSQTLRDALVVKGWHIEEVT HEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCEECCCC >Mature Secondary Structure SAVHISPDDLAELTTLARDLNFDDAERRSALLENGSRDFNAVPGSGKTSLLAAKLLLLA CEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH RKWPYARRGICVLSHTNVARDEIAHRLAGTVEGAQLLSYPHFIGTIHSFVNHFFAMPLLR HCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHH SLGEKIDVIDDQVFADKARSLLLTRKFSGLRIYLENQRNGEGIATTLFYRTAALSVHVES HHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHEEEEEEEEEEEEC GSLPASHTKSYNSLIELKNMLACQGIFRHRDMFAFADLALQTCPRLLDVVHRRFPMVFID CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE EMQDTSWDQESLLNRIFDGRSVMQRFGDIDQKIISDEEQAELLTFPRAGYGCISTSKRFG CCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHCCCHHHHHEECCCCCCCCCHHHHHHH KSISNAVGCVRVSGEAVVGEAENVHAPVLLLYKTDSAIKVVERFGQIVIDQLSEDNIGVR HHHHHHHCEEEECCCEEECCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHH EVKAMSARKTGESNVDAGRHLLDYCPTYGGDKFSAGLRSESFWSLIGDSKGALKETSLSS HHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCHHCCCCCCHHHHHHCCCCCCHHHHHHHH RVSDVRRALLIILRASGASWAQDIRDARALPRAAKAVTPTGTIDKLTRQLALSGEALCAD HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHCCCCEECC GQRDALTEQLYMQLKPYLPEEISLEIFKGLSTFEDAGRRGILNTASSAKCEISFQGRSLD CCHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHCCCCCCCCCCCCCEEEEEECCCEEE IGLGTVAGMKGETHAASLILESYGGSSRKFDVALGLEYIAGTAAKKISKLPKTQQAQMRN EECHHHCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LYVAMSRPAKLLCLAANESRVSQTLRDALVVKGWHIEEVT HEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA