| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is 170025357
Identifier: 170025357
GI number: 170025357
Start: 3429851
End: 3431233
Strand: Reverse
Name: 170025357
Synonym: YPK_3138
Alternate gene names: NA
Gene position: 3431233-3429851 (Counterclockwise)
Preceding gene: 170025361
Following gene: 170025356
Centisome position: 73.17
GC content: 43.38
Gene sequence:
>1383_bases GTGACACCAGTGAAAAAAGGGAATAAAACAGAAGAAAATGCTGTTTCGGTGAAAATTAAAAGGCAGGCGAAACACCCTGA ACTGATACCGTTGCTGCTTGAGGAGATTCGTTTTTTTGGCGTAGAGCCAAGGGATGTGGGACGGAGGTGTGATGACGTCT TTTATGGCAACATTGCCGACAGATATACCTTTGTTCGCTTTTGCCAAAAAAACACTGAACCGGGTTATGGCTTACCCGAA AAAGATTATGAGTTAACAAACATCTGGGCCGCACTACAGGAAAATGACATCAATAACGAACTCCAGAACAGAAGAAAAAA ACGTACTGAATCGCAAGCTTTTAGCTCAGGCCGCAGGGCAGAAAATGAGGTCTCATCTTCTAAGCAAAAACAAACCAGTC GATGGTCATATCAGTTTAAGCATCCGCTTCTGAAAGATGACAAGCGGATAGTTAAAGCCCTGCTGAATGACAAAAAATTG CTCTTTGCCGCTCTACAGCAACATTACTACGCTATCCAAAGTACGAGTCGCGCTCTAAAAAAAACGCTGACCTTGCTACC TGTATCGATCTTTCTGAGAAAAAGAATGACACAGCAGAAGGCAGGTTTTACGTATGAACAGTTAAAGGATCATGCCGCCC ACCTTAATACGCTATTCCCGGAAGTGCTTAAAAAACTCAGGCACAGGTCGCCCTATTCTTCATTCCTGGGATACTCAAAG CTGGTGATGTTGTCTGATACTCATTTTGAGCCGTTTCTGCATGTCATCTTCTACCTTACCGAAGACAATTTAAGCACGTG GTATGCACATGATATCGGTAAAGCCTGGTGCAGTGTCAGTGATGACCATGTGGACATTCATTACTATTCCTTTGCTGGTG AACTACCAGCCCCCCCGGCGCATATGCTTAATGTCAAAACTGATAATGAGGAAAATCTCAACTATCAGGTGCTTTACAAA GATGTGTTGTTACCGTTCCCCTCAGAGGCAACCCATAGAGACGATGGTATTGAAGACAAGAGCGTCAATGAACTGAAGGG GCTAATTGCCAAAGTGGAAGAGAAAAAACTTAACAAAGAAAAATATAGCCCCGCTCACCTCGGCTCGCTAAAGCAGCAAC TAAAGAATATAACCGGGATGACAGACAATCCTAAAAATCACCTGAGCTATATGGCACATGTCGCTAAAAAATATAGCAAA ATCCCTGGGGTAACCTCTCTGACGCAAAGCGGAAAGCCCATTTACAACAACCAGTACAGCAATGAAAAATACAAGAAAAG GAAAATGCGAAGGCTCACTGAACAGGAATGTCTGGATGAAAATGCCGTGCCCGCCAATTTTGAAGAGCACCTCAAGCCTT TAAATCGGGGAGTTTCTAATTAA
Upstream 100 bases:
>100_bases ATAAATATGGTTTTTTTATACATTAAATTAATCATCCTGGCGTCCATTTTTATGGTCGATTTTTCAACATGCATGTCCTT TGTGACAAAAGTGAGAAGCG
Downstream 100 bases:
>100_bases TTTTCAGCCATATATCATCTAACTGAGTAAAACAGTTATTTCTTCCAACAGGCCATCCACTTCGGGTGGCCTTTTTTATT CTGAGGTCAGTATGAAACAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 460; Mature: 459
Protein sequence:
>460_residues MTPVKKGNKTEENAVSVKIKRQAKHPELIPLLLEEIRFFGVEPRDVGRRCDDVFYGNIADRYTFVRFCQKNTEPGYGLPE KDYELTNIWAALQENDINNELQNRRKKRTESQAFSSGRRAENEVSSSKQKQTSRWSYQFKHPLLKDDKRIVKALLNDKKL LFAALQQHYYAIQSTSRALKKTLTLLPVSIFLRKRMTQQKAGFTYEQLKDHAAHLNTLFPEVLKKLRHRSPYSSFLGYSK LVMLSDTHFEPFLHVIFYLTEDNLSTWYAHDIGKAWCSVSDDHVDIHYYSFAGELPAPPAHMLNVKTDNEENLNYQVLYK DVLLPFPSEATHRDDGIEDKSVNELKGLIAKVEEKKLNKEKYSPAHLGSLKQQLKNITGMTDNPKNHLSYMAHVAKKYSK IPGVTSLTQSGKPIYNNQYSNEKYKKRKMRRLTEQECLDENAVPANFEEHLKPLNRGVSN
Sequences:
>Translated_460_residues MTPVKKGNKTEENAVSVKIKRQAKHPELIPLLLEEIRFFGVEPRDVGRRCDDVFYGNIADRYTFVRFCQKNTEPGYGLPE KDYELTNIWAALQENDINNELQNRRKKRTESQAFSSGRRAENEVSSSKQKQTSRWSYQFKHPLLKDDKRIVKALLNDKKL LFAALQQHYYAIQSTSRALKKTLTLLPVSIFLRKRMTQQKAGFTYEQLKDHAAHLNTLFPEVLKKLRHRSPYSSFLGYSK LVMLSDTHFEPFLHVIFYLTEDNLSTWYAHDIGKAWCSVSDDHVDIHYYSFAGELPAPPAHMLNVKTDNEENLNYQVLYK DVLLPFPSEATHRDDGIEDKSVNELKGLIAKVEEKKLNKEKYSPAHLGSLKQQLKNITGMTDNPKNHLSYMAHVAKKYSK IPGVTSLTQSGKPIYNNQYSNEKYKKRKMRRLTEQECLDENAVPANFEEHLKPLNRGVSN >Mature_459_residues TPVKKGNKTEENAVSVKIKRQAKHPELIPLLLEEIRFFGVEPRDVGRRCDDVFYGNIADRYTFVRFCQKNTEPGYGLPEK DYELTNIWAALQENDINNELQNRRKKRTESQAFSSGRRAENEVSSSKQKQTSRWSYQFKHPLLKDDKRIVKALLNDKKLL FAALQQHYYAIQSTSRALKKTLTLLPVSIFLRKRMTQQKAGFTYEQLKDHAAHLNTLFPEVLKKLRHRSPYSSFLGYSKL VMLSDTHFEPFLHVIFYLTEDNLSTWYAHDIGKAWCSVSDDHVDIHYYSFAGELPAPPAHMLNVKTDNEENLNYQVLYKD VLLPFPSEATHRDDGIEDKSVNELKGLIAKVEEKKLNKEKYSPAHLGSLKQQLKNITGMTDNPKNHLSYMAHVAKKYSKI PGVTSLTQSGKPIYNNQYSNEKYKKRKMRRLTEQECLDENAVPANFEEHLKPLNRGVSN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53300; Mature: 53169
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVKKGNKTEENAVSVKIKRQAKHPELIPLLLEEIRFFGVEPRDVGRRCDDVFYGNIAD CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH RYTFVRFCQKNTEPGYGLPEKDYELTNIWAALQENDINNELQNRRKKRTESQAFSSGRRA HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH ENEVSSSKQKQTSRWSYQFKHPLLKDDKRIVKALLNDKKLLFAALQQHYYAIQSTSRALK HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KTLTLLPVSIFLRKRMTQQKAGFTYEQLKDHAAHLNTLFPEVLKKLRHRSPYSSFLGYSK HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHH LVMLSDTHFEPFLHVIFYLTEDNLSTWYAHDIGKAWCSVSDDHVDIHYYSFAGELPAPPA EEEEECCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCH HMLNVKTDNEENLNYQVLYKDVLLPFPSEATHRDDGIEDKSVNELKGLIAKVEEKKLNKE HEEEEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH KYSPAHLGSLKQQLKNITGMTDNPKNHLSYMAHVAKKYSKIPGVTSLTQSGKPIYNNQYS HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC NEKYKKRKMRRLTEQECLDENAVPANFEEHLKPLNRGVSN CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure TPVKKGNKTEENAVSVKIKRQAKHPELIPLLLEEIRFFGVEPRDVGRRCDDVFYGNIAD CCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHH RYTFVRFCQKNTEPGYGLPEKDYELTNIWAALQENDINNELQNRRKKRTESQAFSSGRRA HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCH ENEVSSSKQKQTSRWSYQFKHPLLKDDKRIVKALLNDKKLLFAALQQHYYAIQSTSRALK HHHHHHHHHHHHHHCCHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KTLTLLPVSIFLRKRMTQQKAGFTYEQLKDHAAHLNTLFPEVLKKLRHRSPYSSFLGYSK HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHH LVMLSDTHFEPFLHVIFYLTEDNLSTWYAHDIGKAWCSVSDDHVDIHYYSFAGELPAPPA EEEEECCCHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCH HMLNVKTDNEENLNYQVLYKDVLLPFPSEATHRDDGIEDKSVNELKGLIAKVEEKKLNKE HEEEEECCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH KYSPAHLGSLKQQLKNITGMTDNPKNHLSYMAHVAKKYSKIPGVTSLTQSGKPIYNNQYS HCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCC NEKYKKRKMRRLTEQECLDENAVPANFEEHLKPLNRGVSN CHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA