| Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
|---|---|
| Accession | NC_010465 |
| Length | 4,689,441 |
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The map label for this gene is dld [H]
Identifier: 170025106
GI number: 170025106
Start: 3180359
End: 3182071
Strand: Direct
Name: dld [H]
Synonym: YPK_2884
Alternate gene names: 170025106
Gene position: 3180359-3182071 (Clockwise)
Preceding gene: 170025105
Following gene: 170025108
Centisome position: 67.82
GC content: 45.48
Gene sequence:
>1713_bases ATGAGCCAGTTCAATAATGAAAAAATCCAGCTCTTGCTGACTCAATTACAGCATATAGTGGGTACACGCTATTTACTGAC CGGTGAACGGCAGACTGAACGCTACCGAACCGGTTTCCGCTCCGGTAAAGGGGTGGCCCTCGCCGTGGTATTTCCGTCAA CACTACTGCAACAATGGCAGTTACTGCAGGCTTGTGTGGCTGCTGATACCATCATTATCATGCAAGCCGCCAATACTGGG CTGACAGAAGGCTCGACGCCAAGTGGTGATGATTATGATCGCCCTATCGTCATCTTGAATACCTTACGTCTTAACAACAT TCAGCTATTGGATGATGGCAAACAAGTTATAGGATTCCCTGGAAGCACACTGAATCAATTAGAAAAACGCTTAAAACCTT ATGGTCGCGAACCCCATTCGGTTATTGGCTCCTCCTGTATTGGTGCCTCGGTCGTAGGCGGTATTTGCAATAATTCAGGC GGTTCATTGGTCCAAAGAGGCCCGGCATACACCGAAATGGCTCTGTATGCACAAATTGATGCACAAGGTGAGTTGCAGTT AATTAATCATTTAGGCATCAGCTTGGGAAATACACCAGAAGAGATTCTACAACGTTTGGAACAAGGCCAATATGGTGCTG AAGATATCGAACAGACCGGGCAGCAAGCCTCAGATAGTGAATATGCGACGCGGGTAAGAGATATTGATGCAACGACCCCT TCGCGTTTTAACGCCGACCCCAGACGTTTATTTGAAGCCTCCGGCTGTGCCGGTAAATTGGCAATATTTGCCGTGCGGCT GGATACCTTCCCCAGTGAGAAACAACAACAAGTTTTTTATATCGGCACCAACCAAACCCAGGTATTGACTGAGTTACGTC GTATTATTCTCCGCGACTTTAAACATTTACCTATCGCGGGTGAATATCTGCACCGTGATATTTTTGATATTGCGGAAACC TATGGCAAAGATACATTTGTGATGATTAACAGTATGGGCACCAATAACATGCCCCGATTCTTCACGTTAAAAGGTAAAAT TGATGCTCGCCTCAATAAAATTCCGCATTTAGTCGATCACCTGACCGATCGTGTAATGCAAGGCTTTAGTCAGATATTGC CTAACCATTTACCTAAGCGCCTTAAGACTTACCGTAATCAATATGAACATCATCTGCTGCTCAAAATGTCAGGCGATGGT ATTACCGAAGCGCAACAACATCTACGCGCCTTTTTTGCCACTGCGGAAGGTAACTTTATTGCCTGCACGGCTAATGAAGG TAAAAAGGCTTTTCTACACCGTTTTGCGGCGGCAGGTGCGGCAGTGCGCTATCACGCGGTCCACGCCGATCAAGTGGAAG ATATTTTGGCACTGGATATCGCCCTGCGCCGTAATGAAAAACAGTGGTTTGAAACCTTACCACCAGAAATAGAAAAATGT CTGATCGCGAAGCTCTATTATGGACATTTTCTGTGCCACGTCTTTCATCAAGACTATATCGTTAAGAAAGGGGTTGATGT AAAAGCGCTAAAAGAAAAAATGTTATCGCTCCTCAATGACAAAGGTGCGGAATACCCCGCAGAACATAATGTCGGCCACC TCTATCTGGCAAAACCCGCATTAAAAGATTTTTATCAACAGATCGACCCAACCAACAGTTTTAATCCGGGGATTGGTAAA ACCTCAAAACGTAAGCGTTGGCAGCAAGACTGA
Upstream 100 bases:
>100_bases AATCAACGTCGATATATTAAACGGTTAAGGGAGTAAAAGGTTGATGTAGTAAAAAGCTAATGCAGTAAAAGGCTAATGTC ACTAACAGGGAACCACATTG
Downstream 100 bases:
>100_bases CGCTATTAGCCAGAAATAGCACCATTAGGCTTAGGCATTATCTGAAAGCAAACAATTAGTCACTAAAGCGGAATTTGCCT CTGCTAGCAAATTCCGCTTC
Product: D-lactate dehydrogenase
Products: NA
Alternate protein names: Respiratory D-lactate dehydrogenase [H]
Number of amino acids: Translated: 570; Mature: 569
Protein sequence:
>570_residues MSQFNNEKIQLLLTQLQHIVGTRYLLTGERQTERYRTGFRSGKGVALAVVFPSTLLQQWQLLQACVAADTIIIMQAANTG LTEGSTPSGDDYDRPIVILNTLRLNNIQLLDDGKQVIGFPGSTLNQLEKRLKPYGREPHSVIGSSCIGASVVGGICNNSG GSLVQRGPAYTEMALYAQIDAQGELQLINHLGISLGNTPEEILQRLEQGQYGAEDIEQTGQQASDSEYATRVRDIDATTP SRFNADPRRLFEASGCAGKLAIFAVRLDTFPSEKQQQVFYIGTNQTQVLTELRRIILRDFKHLPIAGEYLHRDIFDIAET YGKDTFVMINSMGTNNMPRFFTLKGKIDARLNKIPHLVDHLTDRVMQGFSQILPNHLPKRLKTYRNQYEHHLLLKMSGDG ITEAQQHLRAFFATAEGNFIACTANEGKKAFLHRFAAAGAAVRYHAVHADQVEDILALDIALRRNEKQWFETLPPEIEKC LIAKLYYGHFLCHVFHQDYIVKKGVDVKALKEKMLSLLNDKGAEYPAEHNVGHLYLAKPALKDFYQQIDPTNSFNPGIGK TSKRKRWQQD
Sequences:
>Translated_570_residues MSQFNNEKIQLLLTQLQHIVGTRYLLTGERQTERYRTGFRSGKGVALAVVFPSTLLQQWQLLQACVAADTIIIMQAANTG LTEGSTPSGDDYDRPIVILNTLRLNNIQLLDDGKQVIGFPGSTLNQLEKRLKPYGREPHSVIGSSCIGASVVGGICNNSG GSLVQRGPAYTEMALYAQIDAQGELQLINHLGISLGNTPEEILQRLEQGQYGAEDIEQTGQQASDSEYATRVRDIDATTP SRFNADPRRLFEASGCAGKLAIFAVRLDTFPSEKQQQVFYIGTNQTQVLTELRRIILRDFKHLPIAGEYLHRDIFDIAET YGKDTFVMINSMGTNNMPRFFTLKGKIDARLNKIPHLVDHLTDRVMQGFSQILPNHLPKRLKTYRNQYEHHLLLKMSGDG ITEAQQHLRAFFATAEGNFIACTANEGKKAFLHRFAAAGAAVRYHAVHADQVEDILALDIALRRNEKQWFETLPPEIEKC LIAKLYYGHFLCHVFHQDYIVKKGVDVKALKEKMLSLLNDKGAEYPAEHNVGHLYLAKPALKDFYQQIDPTNSFNPGIGK TSKRKRWQQD >Mature_569_residues SQFNNEKIQLLLTQLQHIVGTRYLLTGERQTERYRTGFRSGKGVALAVVFPSTLLQQWQLLQACVAADTIIIMQAANTGL TEGSTPSGDDYDRPIVILNTLRLNNIQLLDDGKQVIGFPGSTLNQLEKRLKPYGREPHSVIGSSCIGASVVGGICNNSGG SLVQRGPAYTEMALYAQIDAQGELQLINHLGISLGNTPEEILQRLEQGQYGAEDIEQTGQQASDSEYATRVRDIDATTPS RFNADPRRLFEASGCAGKLAIFAVRLDTFPSEKQQQVFYIGTNQTQVLTELRRIILRDFKHLPIAGEYLHRDIFDIAETY GKDTFVMINSMGTNNMPRFFTLKGKIDARLNKIPHLVDHLTDRVMQGFSQILPNHLPKRLKTYRNQYEHHLLLKMSGDGI TEAQQHLRAFFATAEGNFIACTANEGKKAFLHRFAAAGAAVRYHAVHADQVEDILALDIALRRNEKQWFETLPPEIEKCL IAKLYYGHFLCHVFHQDYIVKKGVDVKALKEKMLSLLNDKGAEYPAEHNVGHLYLAKPALKDFYQQIDPTNSFNPGIGKT SKRKRWQQD
Specific function: First component of the membrane-bound D-lactate oxidase, which is believed to play an important role in the energization of the active transport of a variety of sugars and amino acids [H]
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788454, Length=569, Percent_Identity=65.2021089630931, Blast_Score=801, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016172 - InterPro: IPR016173 - InterPro: IPR012256 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016164 - InterPro: IPR016168 - InterPro: IPR015409 - InterPro: IPR006094 [H]
Pfam domain/function: PF01565 FAD_binding_4; PF09330 Lact-deh-memb [H]
EC number: =1.1.1.28 [H]
Molecular weight: Translated: 64041; Mature: 63910
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQFNNEKIQLLLTQLQHIVGTRYLLTGERQTERYRTGFRSGKGVALAVVFPSTLLQQWQ CCCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHH LLQACVAADTIIIMQAANTGLTEGSTPSGDDYDRPIVILNTLRLNNIQLLDDGKQVIGFP HHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCEEEECC GSTLNQLEKRLKPYGREPHSVIGSSCIGASVVGGICNNSGGSLVQRGPAYTEMALYAQID CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHEEEEEEEC AQGELQLINHLGISLGNTPEEILQRLEQGQYGAEDIEQTGQQASDSEYATRVRDIDATTP CCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC SRFNADPRRLFEASGCAGKLAIFAVRLDTFPSEKQQQVFYIGTNQTQVLTELRRIILRDF CCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH KHLPIAGEYLHRDIFDIAETYGKDTFVMINSMGTNNMPRFFTLKGKIDARLNKIPHLVDH HCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH LTDRVMQGFSQILPNHLPKRLKTYRNQYEHHLLLKMSGDGITEAQQHLRAFFATAEGNFI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEE ACTANEGKKAFLHRFAAAGAAVRYHAVHADQVEDILALDIALRRNEKQWFETLPPEIEKC EEECCCCHHHHHHHHHHHCHHHEEEECCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHH LIAKLYYGHFLCHVFHQDYIVKKGVDVKALKEKMLSLLNDKGAEYPAEHNVGHLYLAKPA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHH LKDFYQQIDPTNSFNPGIGKTSKRKRWQQD HHHHHHHCCCCCCCCCCCCCCHHHHCCCCC >Mature Secondary Structure SQFNNEKIQLLLTQLQHIVGTRYLLTGERQTERYRTGFRSGKGVALAVVFPSTLLQQWQ CCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHH LLQACVAADTIIIMQAANTGLTEGSTPSGDDYDRPIVILNTLRLNNIQLLDDGKQVIGFP HHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCEEEECC GSTLNQLEKRLKPYGREPHSVIGSSCIGASVVGGICNNSGGSLVQRGPAYTEMALYAQID CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHEEEEEEEC AQGELQLINHLGISLGNTPEEILQRLEQGQYGAEDIEQTGQQASDSEYATRVRDIDATTP CCCHHHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCC SRFNADPRRLFEASGCAGKLAIFAVRLDTFPSEKQQQVFYIGTNQTQVLTELRRIILRDF CCCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH KHLPIAGEYLHRDIFDIAETYGKDTFVMINSMGTNNMPRFFTLKGKIDARLNKIPHLVDH HCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH LTDRVMQGFSQILPNHLPKRLKTYRNQYEHHLLLKMSGDGITEAQQHLRAFFATAEGNFI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEE ACTANEGKKAFLHRFAAAGAAVRYHAVHADQVEDILALDIALRRNEKQWFETLPPEIEKC EEECCCCHHHHHHHHHHHCHHHEEEECCHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHH LIAKLYYGHFLCHVFHQDYIVKKGVDVKALKEKMLSLLNDKGAEYPAEHNVGHLYLAKPA HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECHH LKDFYQQIDPTNSFNPGIGKTSKRKRWQQD HHHHHHHCCCCCCCCCCCCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6386470; 3882663; 9278503; 10944213 [H]