Definition | Yersinia pseudotuberculosis YPIII chromosome, complete genome. |
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Accession | NC_010465 |
Length | 4,689,441 |
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The map label for this gene is 170024940
Identifier: 170024940
GI number: 170024940
Start: 2996583
End: 2997428
Strand: Reverse
Name: 170024940
Synonym: YPK_2715
Alternate gene names: NA
Gene position: 2997428-2996583 (Counterclockwise)
Preceding gene: 170024941
Following gene: 170024924
Centisome position: 63.92
GC content: 48.7
Gene sequence:
>846_bases ATGAACCAAGGCGCGTTATTGGCTATTCTCGCCTCCCTGATTTTCAGCGTGATGAATGTGTTAGTCAAAACCATCGCTGA TGAAATTCCTACCGGTGAGATCGTATTCTTCCGCAGTAGCATTGGTTGCTTGTTGATTGGGTTACTGATGTATCAGCGTG GGATAGCGTTCAGCCGTGAAGATCGCCCATTGTTGGTACTCCGTGGGACGATGGGCGCACTGTATCTGATTTGCTATTTT TACAGTATTGCTCACCTGACATTGGCAGATGCCAGCATGTTGGCCTATCTGTCACCGTTTTTCTCGATTGTGCTGTCATT ATTGGTGTTGCGCGAACGGGTGAATGCCACCATGGCTTTCTGGTTGGTGATGGTGATTATTGGCGCGATTATCTTGATCC GCCCGTGGAATTTTTCCACCTATACGTTGGCGTCTCTGGTGGGGGTGATGAGTGCGGTATTTGCGGCTATTGCTTATTTG TCGGTGAATAAGCTCACGAAGCGCCATCACAATTATGAAATCGTCTTCTACTTTTTGTTTATCGCGACGCTGATCTCTAT CCCACTGATGTGGCATAACTTTGTTTGGCCGAGTGGGCATCAGTTCGGCATTCTCATCGCCATTGCTCTTGTCTCATTGC TAGGTCAGGTGGTTTTAACGCAGGCTTTCTCTTCGGACAACCTGATCGTGGTGTCGGTGGTGCGCTATATCGGCATTGTC TTCAATATTACCTGGGGCTGGCTATTTTGGGATGAGGTGCCATTGATGTTGTCGTTGATGGGGGGCGGGTTGGTGGTGGT ATCGTGCATTCAATTGGGGTTACGCAGTAAAAAGAAGGCGGCCTGA
Upstream 100 bases:
>100_bases TTATTGACCGGGTCGGTGAGGAACATTGCCATCCCTCTTTATTGGGGGACGATTGTGACAGGCAGGCGGCCATCATCGAA CAACAATGGCGGAGCCAGAC
Downstream 100 bases:
>100_bases TATTCACACAAAGCATACTGGCCGTTATACCCCAAATAATTCGAGTGGCAGGAAGGCAGCCAACGCATAGGCAGCCAACG CATAGGCAGCTTGAAGCATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 281; Mature: 281
Protein sequence:
>281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGHQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA
Sequences:
>Translated_281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGHQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA >Mature_281_residues MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSREDRPLLVLRGTMGALYLICYF YSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAFWLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYL SVNKLTKRHHNYEIVFYFLFIATLISIPLMWHNFVWPSGHQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
Organism=Homo sapiens, GI197927233, Length=290, Percent_Identity=25.1724137931034, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI23397492, Length=290, Percent_Identity=25.1724137931034, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24645940, Length=297, Percent_Identity=28.2828282828283, Blast_Score=95, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31238; Mature: 31238
Theoretical pI: Translated: 9.52; Mature: 9.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSRE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC DRPLLVLRGTMGALYLICYFYSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAF CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYLSVNKLTKRHHNYEIVFYFLF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IATLISIPLMWHNFVWPSGHQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MNQGALLAILASLIFSVMNVLVKTIADEIPTGEIVFFRSSIGCLLIGLLMYQRGIAFSRE CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCC DRPLLVLRGTMGALYLICYFYSIAHLTLADASMLAYLSPFFSIVLSLLVLRERVNATMAF CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WLVMVIIGAIILIRPWNFSTYTLASLVGVMSAVFAAIAYLSVNKLTKRHHNYEIVFYFLF HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH IATLISIPLMWHNFVWPSGHQFGILIAIALVSLLGQVVLTQAFSSDNLIVVSVVRYIGIV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH FNITWGWLFWDEVPLMLSLMGGGLVVVSCIQLGLRSKKKAA HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9252185 [H]